Gene annotation
Transcriptome id Sobic.003G116900.2,Sobic.003G116900.3,Sobic.003G116900.4,Sobic.003G116900.1
Synonym Sb03g009850
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
dynein light chain type 1 domain containing protein, expressed
UniProt C5XFV0 , A0A1W0VWX5
Pfam PF01221
Panther DB PTHR11886
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT4G15930 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os01g15260.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023955 , Zm00025a035328
Brachypodium -
Barley -
Wheat TraesCS3A02G175300 , TraesCS3B02G205000 , TraesCS3D02G180700
Populus -


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cDNA sequences
Sobic.003G116900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G436300 expressed protein -
2 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
3 Sobic.004G337200 dehydrogenase, putative, expressed -
4 Sobic.008G074700 - -
5 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
6 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.010G020300 spastin, putative, expressed K13254: spastin
8 Sobic.003G365000 cytochrome P450, putative, expressed -
9 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
10 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
11 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
12 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
13 Sobic.003G257000 THAP domain-containing protein 4, putative, expressed -
14 Sobic.006G160300 DNA binding protein, putative, expressed -
15 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
16 Sobic.003G388251 - K01166: ribonuclease T2
17 Sobic.008G090600 expressed protein -
18 Sobic.001G427200 josephin, putative, expressed K15235: josephin
19 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
20 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54


Gene co-expression network
sample Sobic003G116900 Sobic003G116900 Sobic003G436300 Sobic003G436300 Sobic003G116900--Sobic003G436300 Sobic001G270400 Sobic001G270400 Sobic003G116900--Sobic001G270400 Sobic004G337200 Sobic004G337200 Sobic003G116900--Sobic004G337200 Sobic008G074700 Sobic008G074700 Sobic003G116900--Sobic008G074700 Sobic006G034000 Sobic006G034000 Sobic003G116900--Sobic006G034000 Sobic002G105200 Sobic002G105200 Sobic003G116900--Sobic002G105200 Sobic010G020300 Sobic010G020300 Sobic003G116900--Sobic010G020300 Sobic003G365000 Sobic003G365000 Sobic003G116900--Sobic003G365000 Sobic007G024700 Sobic007G024700 Sobic003G116900--Sobic007G024700 Sobic003G436300--Sobic006G034000 Sobic001G085100 Sobic001G085100 Sobic003G436300--Sobic001G085100 Sobic003G436300--Sobic010G020300 Sobic001G057800 Sobic001G057800 Sobic003G436300--Sobic001G057800 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic001G296900 Sobic001G296900 Sobic003G436300--Sobic001G296900 Sobic001G270400--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G270400--Sobic009G094300 Sobic010G205800 Sobic010G205800 Sobic001G270400--Sobic010G205800 Sobic003G109100 Sobic003G109100 Sobic001G270400--Sobic003G109100 Sobic001G137100 Sobic001G137100 Sobic001G270400--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic001G270400--Sobic002G270500 Sobic001G121200 Sobic001G121200 Sobic001G270400--Sobic001G121200 Sobic004G052900 Sobic004G052900 Sobic001G270400--Sobic004G052900 Sobic001G199100 Sobic001G199100 Sobic001G270400--Sobic001G199100 Sobic004G337200--Sobic001G270400 Sobic004G337200--Sobic003G116900 Sobic004G337200--Sobic001G121200 Sobic004G337200--Sobic001G296900 Sobic004G266400 Sobic004G266400 Sobic004G337200--Sobic004G266400 Sobic002G364800 Sobic002G364800 Sobic004G337200--Sobic002G364800 Sobic006G160300 Sobic006G160300 Sobic004G337200--Sobic006G160300 Sobic005G203800 Sobic005G203800 Sobic004G337200--Sobic005G203800 Sobic004G337200--Sobic006G034000 Sobic008G074700--Sobic006G034000 Sobic008G074700--Sobic003G116900 Sobic004G119100 Sobic004G119100 Sobic008G074700--Sobic004G119100 Sobic001G098200 Sobic001G098200 Sobic008G074700--Sobic001G098200 Sobic007G186000 Sobic007G186000 Sobic008G074700--Sobic007G186000 Sobic008G074700--Sobic005G203800 Sobic001G180900 Sobic001G180900 Sobic008G074700--Sobic001G180900 Sobic008G074700--Sobic003G436300 Sobic003G413500 Sobic003G413500 Sobic008G074700--Sobic003G413500 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic002G382600 Sobic002G382600 Sobic002G105200--Sobic002G382600 Sobic003G416400 Sobic003G416400 Sobic002G105200--Sobic003G416400 Sobic004G237400 Sobic004G237400 Sobic002G105200--Sobic004G237400 Sobic003G053800 Sobic003G053800 Sobic002G105200--Sobic003G053800 Sobic002G105200--Sobic010G020300 Sobic003G352200 Sobic003G352200 Sobic002G105200--Sobic003G352200 Sobic002G105200--Sobic001G296900 Sobic001G473600 Sobic001G473600 Sobic002G105200--Sobic001G473600 Sobic004G091200 Sobic004G091200 Sobic002G105200--Sobic004G091200 Sobic001G124200 Sobic001G124200 Sobic010G020300--Sobic001G124200 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic001G390800 Sobic001G390800 Sobic010G020300--Sobic001G390800 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G278200 Sobic010G278200 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic010G020300--Sobic001G121200 Sobic009G034700 Sobic009G034700 Sobic003G365000--Sobic009G034700 Sobic004G124200 Sobic004G124200 Sobic003G365000--Sobic004G124200 Sobic003G388251 Sobic003G388251 Sobic003G365000--Sobic003G388251 Sobic003G365000--Sobic003G116900 Sobic010G192800 Sobic010G192800 Sobic003G365000--Sobic010G192800 Sobic005G178100 Sobic005G178100 Sobic003G365000--Sobic005G178100 Sobic001G130000 Sobic001G130000 Sobic003G365000--Sobic001G130000 Sobic003G404200 Sobic003G404200 Sobic003G365000--Sobic003G404200 Sobic001G320200 Sobic001G320200 Sobic003G365000--Sobic001G320200 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800
Octagon: transcription factors


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