Gene annotation
Transcriptome id Sobic.003G098000.1
Synonym Sb03g008200
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt C5XEU8
Pfam PF04826
Panther DB PTHR23315 PTHR23315:SF65
NCBI CDD -
KEGG Orthology K08332; vacuolar protein 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03440 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g02200.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023734 , Zm00025a035453
Brachypodium KQK02376
Barley HORVU3Hr1G001450.1 , HORVU3Hr1G001450.2 , HORVU3Hr1G001450.5 , HORVU3Hr1G001450.4
Wheat TraesCS3B02G012500 , TraesCS3A02G009600 , TraesCS3D02G001900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
2 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
3 Sobic.003G228100 cytochrome P450 72A1, putative, expressed -
4 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
6 Sobic.004G337200 dehydrogenase, putative, expressed -
7 Sobic.002G217400 HD domain containing protein, putative, expressed -
8 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
9 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
10 Sobic.003G352600 ZOS1-16 - C2H2 zinc finger protein, expressed -
11 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
12 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
14 Sobic.004G167400 expressed protein -
15 Sobic.001G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
17 Sobic.007G068900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
18 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
19 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
20 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -


Gene co-expression network
sample Sobic003G098000 Sobic003G098000 Sobic002G375300 Sobic002G375300 Sobic003G098000--Sobic002G375300 Sobic004G102400 Sobic004G102400 Sobic003G098000--Sobic004G102400 Sobic003G228100 Sobic003G228100 Sobic003G098000--Sobic003G228100 Sobic004G042300 Sobic004G042300 Sobic003G098000--Sobic004G042300 Sobic003G246700 Sobic003G246700 Sobic003G098000--Sobic003G246700 Sobic004G337200 Sobic004G337200 Sobic003G098000--Sobic004G337200 Sobic002G217400 Sobic002G217400 Sobic003G098000--Sobic002G217400 Sobic005G203800 Sobic005G203800 Sobic003G098000--Sobic005G203800 Sobic001G057800 Sobic001G057800 Sobic003G098000--Sobic001G057800 Sobic001G158500 Sobic001G158500 Sobic002G375300--Sobic001G158500 Sobic001G395400 Sobic001G395400 Sobic002G375300--Sobic001G395400 Sobic010G000900 Sobic010G000900 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic007G068900 Sobic007G068900 Sobic002G375300--Sobic007G068900 Sobic002G375300--Sobic003G098000 Sobic006G092400 Sobic006G092400 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic002G375300--Sobic004G102400 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic009G167700 Sobic009G167700 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G102400--Sobic004G042300 Sobic001G185500 Sobic001G185500 Sobic003G228100--Sobic001G185500 Sobic003G228100--Sobic001G089800 Sobic003G228100--Sobic001G003000 Sobic001G350700 Sobic001G350700 Sobic003G228100--Sobic001G350700 Sobic003G228100--Sobic004G042300 Sobic008G093000 Sobic008G093000 Sobic003G228100--Sobic008G093000 Sobic003G228100--Sobic003G098000 Sobic004G005200 Sobic004G005200 Sobic003G228100--Sobic004G005200 Sobic003G352600 Sobic003G352600 Sobic003G228100--Sobic003G352600 Sobic006G052100 Sobic006G052100 Sobic004G042300--Sobic006G052100 Sobic009G193700 Sobic009G193700 Sobic004G042300--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic004G042300--Sobic008G062200 Sobic004G042300--Sobic004G102400 Sobic003G320700 Sobic003G320700 Sobic004G042300--Sobic003G320700 Sobic003G329400 Sobic003G329400 Sobic004G042300--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic004G042300--Sobic002G132000 Sobic004G042300--Sobic001G089800 Sobic001G290000 Sobic001G290000 Sobic004G042300--Sobic001G290000 Sobic004G067100 Sobic004G067100 Sobic003G246700--Sobic004G067100 Sobic004G080100 Sobic004G080100 Sobic003G246700--Sobic004G080100 Sobic010G049100 Sobic010G049100 Sobic003G246700--Sobic010G049100 Sobic003G246700--Sobic007G068900 Sobic003G246700--Sobic010G000900 Sobic002G226900 Sobic002G226900 Sobic003G246700--Sobic002G226900 Sobic010G277100 Sobic010G277100 Sobic003G246700--Sobic010G277100 Sobic007G216100 Sobic007G216100 Sobic003G246700--Sobic007G216100 Sobic003G117900 Sobic003G117900 Sobic003G246700--Sobic003G117900 Sobic001G270400 Sobic001G270400 Sobic004G337200--Sobic001G270400 Sobic003G116900 Sobic003G116900 Sobic004G337200--Sobic003G116900 Sobic001G121200 Sobic001G121200 Sobic004G337200--Sobic001G121200 Sobic001G296900 Sobic001G296900 Sobic004G337200--Sobic001G296900 Sobic004G266400 Sobic004G266400 Sobic004G337200--Sobic004G266400 Sobic002G364800 Sobic002G364800 Sobic004G337200--Sobic002G364800 Sobic006G160300 Sobic006G160300 Sobic004G337200--Sobic006G160300 Sobic004G337200--Sobic005G203800 Sobic006G034000 Sobic006G034000 Sobic004G337200--Sobic006G034000 Sobic001G414500 Sobic001G414500 Sobic002G217400--Sobic001G414500 Sobic002G217400--Sobic004G102400 Sobic002G217400--Sobic003G352600 Sobic002G217400--Sobic005G203800 Sobic001G350900 Sobic001G350900 Sobic002G217400--Sobic001G350900 Sobic002G217400--Sobic003G098000 Sobic009G138100 Sobic009G138100 Sobic002G217400--Sobic009G138100 Sobic002G217400--Sobic002G375300 Sobic010G130200 Sobic010G130200 Sobic002G217400--Sobic010G130200 Sobic005G203800--Sobic010G130200 Sobic009G133600 Sobic009G133600 Sobic005G203800--Sobic009G133600 Sobic003G436300 Sobic003G436300 Sobic005G203800--Sobic003G436300 Sobic007G007000 Sobic007G007000 Sobic005G203800--Sobic007G007000 Sobic005G203800--Sobic006G034000 Sobic005G203800--Sobic001G121200 Sobic003G354400 Sobic003G354400 Sobic005G203800--Sobic003G354400 Sobic010G205800 Sobic010G205800 Sobic005G203800--Sobic010G205800 Sobic001G390800 Sobic001G390800 Sobic005G203800--Sobic001G390800 Sobic001G323000 Sobic001G323000 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic002G385900 Sobic002G385900 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000
Octagon: transcription factors


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