Gene annotation
Transcriptome id Sobic.007G068900.1
Synonym Sb07g005440, ATG8C
Functional annotation autophagy-related protein, putative, expressed
UniProt C5YIC7
Pfam PF04110
Panther DB PTHR10969 PTHR10969:SF43
NCBI CDD KOG1654; Microtubule-associated anchor protein involved in autophagy and membrane trafficking
KEGG Orthology K08341; GABARAP, ATG8, GABA(A) receptor-associated protein
Gene Ontology GO:0005737; cytoplasm GO:0000045autophagosome assembly


Orthologs (automatic annotation)
TAIR AT1G62040 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os08g09240.2 : autophagy-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a054802 , Zm00025a057061 , Zm00025a029961
Brachypodium KQJ84694 , KQJ84693 , KQJ95062 , PNT66624
Barley HORVU2Hr1G103010.4 , HORVU2Hr1G103010.1 , HORVU2Hr1G103010.3 , HORVU2Hr1G103010.2
Wheat TraesCS2B02G491200 , TraesCS2A02G468300
Populus -


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cDNA sequences
Sobic.007G068900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
2 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
3 Sobic.010G164000 FYVE zinc finger domain containing protein, expressed -
4 Sobic.005G086100 glutathione S-transferase, N-terminal domain containing protein, expressed K01800: maiA, maleylacetoacetate isomerase
5 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
6 Sobic.010G000900 spotted leaf 11, putative, expressed -
7 Sobic.001G508100 expressed protein -
8 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
9 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.002G352600 expressed protein -
11 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
12 Sobic.004G167400 expressed protein -
13 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
14 Sobic.002G217400 HD domain containing protein, putative, expressed -
15 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
17 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
18 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
19 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
20 Sobic.007G216100 expressed protein -


Gene co-expression network
sample Sobic007G068900 Sobic007G068900 Sobic002G375300 Sobic002G375300 Sobic007G068900--Sobic002G375300 Sobic003G246700 Sobic003G246700 Sobic007G068900--Sobic003G246700 Sobic010G164000 Sobic010G164000 Sobic007G068900--Sobic010G164000 Sobic005G086100 Sobic005G086100 Sobic007G068900--Sobic005G086100 Sobic004G067100 Sobic004G067100 Sobic007G068900--Sobic004G067100 Sobic010G000900 Sobic010G000900 Sobic007G068900--Sobic010G000900 Sobic001G508100 Sobic001G508100 Sobic007G068900--Sobic001G508100 Sobic007G007000 Sobic007G007000 Sobic007G068900--Sobic007G007000 Sobic001G121200 Sobic001G121200 Sobic007G068900--Sobic001G121200 Sobic001G158500 Sobic001G158500 Sobic002G375300--Sobic001G158500 Sobic001G395400 Sobic001G395400 Sobic002G375300--Sobic001G395400 Sobic002G375300--Sobic010G000900 Sobic003G416400 Sobic003G416400 Sobic002G375300--Sobic003G416400 Sobic002G375300--Sobic007G068900 Sobic003G098000 Sobic003G098000 Sobic002G375300--Sobic003G098000 Sobic006G092400 Sobic006G092400 Sobic002G375300--Sobic006G092400 Sobic002G352600 Sobic002G352600 Sobic002G375300--Sobic002G352600 Sobic004G102400 Sobic004G102400 Sobic002G375300--Sobic004G102400 Sobic003G246700--Sobic004G067100 Sobic004G080100 Sobic004G080100 Sobic003G246700--Sobic004G080100 Sobic010G049100 Sobic010G049100 Sobic003G246700--Sobic010G049100 Sobic003G246700--Sobic007G068900 Sobic003G246700--Sobic010G000900 Sobic002G226900 Sobic002G226900 Sobic003G246700--Sobic002G226900 Sobic010G277100 Sobic010G277100 Sobic003G246700--Sobic010G277100 Sobic007G216100 Sobic007G216100 Sobic003G246700--Sobic007G216100 Sobic003G117900 Sobic003G117900 Sobic003G246700--Sobic003G117900 Sobic002G262900 Sobic002G262900 Sobic010G164000--Sobic002G262900 Sobic001G085100 Sobic001G085100 Sobic010G164000--Sobic001G085100 Sobic010G164000--Sobic010G000900 Sobic004G275700 Sobic004G275700 Sobic010G164000--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic010G164000--Sobic004G066200 Sobic010G164000--Sobic001G121200 Sobic001G091300 Sobic001G091300 Sobic010G164000--Sobic001G091300 Sobic009G228700 Sobic009G228700 Sobic010G164000--Sobic009G228700 Sobic010G261600 Sobic010G261600 Sobic010G164000--Sobic010G261600 Sobic002G113100 Sobic002G113100 Sobic005G086100--Sobic002G113100 Sobic005G086100--Sobic007G068900 Sobic009G210600 Sobic009G210600 Sobic005G086100--Sobic009G210600 Sobic005G086100--Sobic007G007000 Sobic003G354400 Sobic003G354400 Sobic005G086100--Sobic003G354400 Sobic005G044800 Sobic005G044800 Sobic005G086100--Sobic005G044800 Sobic006G049300 Sobic006G049300 Sobic005G086100--Sobic006G049300 Sobic005G086100--Sobic001G508100 Sobic009G217100 Sobic009G217100 Sobic005G086100--Sobic009G217100 Sobic004G067100--Sobic004G080100 Sobic004G067100--Sobic003G246700 Sobic002G166900 Sobic002G166900 Sobic004G067100--Sobic002G166900 Sobic004G067100--Sobic003G117900 Sobic004G067100--Sobic001G508100 Sobic004G167400 Sobic004G167400 Sobic004G067100--Sobic004G167400 Sobic004G067100--Sobic002G226900 Sobic006G090000 Sobic006G090000 Sobic004G067100--Sobic006G090000 Sobic003G077900 Sobic003G077900 Sobic004G067100--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic010G242400 Sobic010G242400 Sobic001G508100--Sobic010G242400 Sobic001G508100--Sobic006G092400 Sobic001G508100--Sobic001G121200 Sobic004G116000 Sobic004G116000 Sobic001G508100--Sobic004G116000 Sobic006G160300 Sobic006G160300 Sobic001G508100--Sobic006G160300 Sobic001G508100--Sobic004G067100 Sobic001G181700 Sobic001G181700 Sobic001G508100--Sobic001G181700 Sobic001G508100--Sobic009G217100 Sobic003G086900 Sobic003G086900 Sobic001G508100--Sobic003G086900 Sobic007G007000--Sobic009G217100 Sobic001G123000 Sobic001G123000 Sobic007G007000--Sobic001G123000 Sobic001G137300 Sobic001G137300 Sobic007G007000--Sobic001G137300 Sobic002G251700 Sobic002G251700 Sobic007G007000--Sobic002G251700 Sobic009G259400 Sobic009G259400 Sobic007G007000--Sobic009G259400 Sobic007G007000--Sobic010G000900 Sobic007G007000--Sobic002G352600 Sobic007G007000--Sobic001G121200 Sobic005G203800 Sobic005G203800 Sobic007G007000--Sobic005G203800 Sobic001G390800 Sobic001G390800 Sobic001G121200--Sobic001G390800 Sobic010G205800 Sobic010G205800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200
Octagon: transcription factors


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