Gene annotation
Transcriptome id Sobic.004G067100.2
Synonym KNAT3
Functional annotation homeobox protein knotted-1, putative, expressed
UniProt A0A1Z5RLP9
Pfam PF03789 PF03791 PF03790 PF05920
Panther DB PTHR11850 PTHR11850:SF127
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005634nucleus GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G25220 : KNOTTED1-like homeobox gene 3
RAP-DB (Rice) LOC_Os02g08544.1 : homeobox protein knotted-1, putative, expressed
MaizeGDB (Corn) Zm00025a019271 , Zm00025a034748 , Zm00025a051364
Brachypodium KQJ93689 , KQJ93691 , KQJ93690 , KQK16806 , KQK16805 , KQJ95956 , KQJ95957 , KQJ95958
Barley HORVU7Hr1G114650.6 , HORVU7Hr1G114650.4 , HORVU7Hr1G114650.5 , HORVU7Hr1G114650.2 , HORVU7Hr1G114650.3 , HORVU7Hr1G114650.1 , HORVU6Hr1G028610.7 , HORVU6Hr1G028610.6 , HORVU6Hr1G028610.5 , HORVU6Hr1G028610.4 , HORVU6Hr1G028610.3 , HORVU6Hr1G028610.2 , HORVU6Hr1G028610.1 , HORVU6Hr1G028610.8
Wheat TraesCS7D02G501000 , TraesCS7D02G501000 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS7B02G423100 , TraesCS1B02G135600 , TraesCS1B02G135600 , TraesCS6A02G145500 , TraesCS6A02G145500 , TraesCS7A02G511800 , TraesCS7A02G511800 , TraesCS5B02G454600 , TraesCS6B02G173900 , TraesCS6D02G134800 , TraesCS6D02G134800 , TraesCS6B02G173900
Populus PNT32443 , PNT32441 , PNT32444


JBrowse

Open New Page


cDNA sequences
Sobic.004G067100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
2 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
3 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.003G117900 protein kinase, putative, expressed -
5 Sobic.001G508100 expressed protein -
6 Sobic.004G167400 expressed protein -
7 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
8 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
9 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
10 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
11 Sobic.010G000900 spotted leaf 11, putative, expressed -
12 Sobic.009G099500 expressed protein -
13 Sobic.006G092400 calmodulin binding protein, putative, expressed -
14 Sobic.002G393500 expressed protein -
15 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
16 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
17 Sobic.001G106700 expressed protein -
18 Sobic.007G068900 autophagy-related protein, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
19 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
20 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2


Gene co-expression network
sample Sobic004G067100 Sobic004G067100 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic002G166900 Sobic002G166900 Sobic004G067100--Sobic002G166900 Sobic003G117900 Sobic003G117900 Sobic004G067100--Sobic003G117900 Sobic001G508100 Sobic001G508100 Sobic004G067100--Sobic001G508100 Sobic004G167400 Sobic004G167400 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic006G090000 Sobic006G090000 Sobic004G067100--Sobic006G090000 Sobic003G077900 Sobic003G077900 Sobic004G067100--Sobic003G077900 Sobic010G049100 Sobic010G049100 Sobic004G080100--Sobic010G049100 Sobic004G080100--Sobic004G067100 Sobic004G080100--Sobic003G246700 Sobic004G080100--Sobic002G226900 Sobic001G219300 Sobic001G219300 Sobic004G080100--Sobic001G219300 Sobic008G032600 Sobic008G032600 Sobic004G080100--Sobic008G032600 Sobic003G139800 Sobic003G139800 Sobic004G080100--Sobic003G139800 Sobic008G179900 Sobic008G179900 Sobic004G080100--Sobic008G179900 Sobic008G089900 Sobic008G089900 Sobic004G080100--Sobic008G089900 Sobic003G246700--Sobic004G067100 Sobic003G246700--Sobic004G080100 Sobic003G246700--Sobic010G049100 Sobic007G068900 Sobic007G068900 Sobic003G246700--Sobic007G068900 Sobic010G000900 Sobic010G000900 Sobic003G246700--Sobic010G000900 Sobic003G246700--Sobic002G226900 Sobic010G277100 Sobic010G277100 Sobic003G246700--Sobic010G277100 Sobic007G216100 Sobic007G216100 Sobic003G246700--Sobic007G216100 Sobic003G246700--Sobic003G117900 Sobic002G166900--Sobic006G090000 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic010G042100 Sobic010G042100 Sobic003G117900--Sobic010G042100 Sobic003G370900 Sobic003G370900 Sobic003G117900--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic001G007200 Sobic001G007200 Sobic003G117900--Sobic001G007200 Sobic003G117900--Sobic004G167400 Sobic003G117900--Sobic004G067100 Sobic002G045300 Sobic002G045300 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic010G242400 Sobic010G242400 Sobic001G508100--Sobic010G242400 Sobic006G092400 Sobic006G092400 Sobic001G508100--Sobic006G092400 Sobic001G121200 Sobic001G121200 Sobic001G508100--Sobic001G121200 Sobic004G116000 Sobic004G116000 Sobic001G508100--Sobic004G116000 Sobic006G160300 Sobic006G160300 Sobic001G508100--Sobic006G160300 Sobic001G508100--Sobic004G067100 Sobic001G181700 Sobic001G181700 Sobic001G508100--Sobic001G181700 Sobic009G217100 Sobic009G217100 Sobic001G508100--Sobic009G217100 Sobic003G086900 Sobic003G086900 Sobic001G508100--Sobic003G086900 Sobic004G167400--Sobic010G000900 Sobic004G167400--Sobic002G166900 Sobic004G167400--Sobic001G329100 Sobic003G257000 Sobic003G257000 Sobic004G167400--Sobic003G257000 Sobic004G167400--Sobic010G253800 Sobic002G352700 Sobic002G352700 Sobic004G167400--Sobic002G352700 Sobic004G167400--Sobic003G117900 Sobic001G057800 Sobic001G057800 Sobic004G167400--Sobic001G057800 Sobic010G229400 Sobic010G229400 Sobic004G167400--Sobic010G229400 Sobic009G075800 Sobic009G075800 Sobic002G226900--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic002G226900--Sobic004G275700 Sobic003G012200 Sobic003G012200 Sobic002G226900--Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic002G226900--Sobic001G199100 Sobic002G226900--Sobic009G217100 Sobic003G365300 Sobic003G365300 Sobic002G226900--Sobic003G365300 Sobic010G251000 Sobic010G251000 Sobic002G226900--Sobic010G251000 Sobic002G226900--Sobic010G000900 Sobic001G203900 Sobic001G203900 Sobic002G226900--Sobic001G203900 Sobic006G090000--Sobic002G166900 Sobic006G090000--Sobic006G092400 Sobic006G090000--Sobic010G000900 Sobic006G090000--Sobic004G067100 Sobic001G414500 Sobic001G414500 Sobic006G090000--Sobic001G414500 Sobic006G090000--Sobic003G077900 Sobic007G179800 Sobic007G179800 Sobic006G090000--Sobic007G179800 Sobic006G090000--Sobic004G321900 Sobic006G090000--Sobic001G283200 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.