Gene annotation
Transcriptome id Sobic.002G393500.1
Synonym Sb02g040880
Functional annotation expressed protein
UniProt C5X3E2
Pfam -
Panther DB PTHR35312
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G12240 : -
RAP-DB (Rice) LOC_Os07g44744.1 : expressed protein
MaizeGDB (Corn) Zm00025a048944 , Zm00025a015302
Brachypodium PNT74659 , KQK14969 , KQK14968
Barley -
Wheat TraesCS2B02G171100 , TraesCS2A02G145700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
2 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
3 Sobic.002G178601 - -
4 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
5 Sobic.010G000900 spotted leaf 11, putative, expressed -
6 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
7 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
8 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
9 Sobic.003G261400 DUF292 domain containing protein, expressed -
10 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.007G098200 - -
12 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
13 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
14 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
15 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15
16 Sobic.001G261436 - -
17 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
18 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
19 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase


Gene co-expression network
sample Sobic002G393500 Sobic002G393500 Sobic004G212200 Sobic004G212200 Sobic002G393500--Sobic004G212200 Sobic003G274800 Sobic003G274800 Sobic002G393500--Sobic003G274800 Sobic002G178601 Sobic002G178601 Sobic002G393500--Sobic002G178601 Sobic009G228800 Sobic009G228800 Sobic002G393500--Sobic009G228800 Sobic010G000900 Sobic010G000900 Sobic002G393500--Sobic010G000900 Sobic001G047400 Sobic001G047400 Sobic002G393500--Sobic001G047400 Sobic002G226900 Sobic002G226900 Sobic002G393500--Sobic002G226900 Sobic001G021300 Sobic001G021300 Sobic002G393500--Sobic001G021300 Sobic003G261400 Sobic003G261400 Sobic002G393500--Sobic003G261400 Sobic004G212200--Sobic002G393500 Sobic004G212200--Sobic009G228800 Sobic004G212200--Sobic003G261400 Sobic004G212200--Sobic003G274800 Sobic004G212200--Sobic010G000900 Sobic001G388200 Sobic001G388200 Sobic004G212200--Sobic001G388200 Sobic002G166900 Sobic002G166900 Sobic004G212200--Sobic002G166900 Sobic003G261500 Sobic003G261500 Sobic004G212200--Sobic003G261500 Sobic001G512300 Sobic001G512300 Sobic004G212200--Sobic001G512300 Sobic003G274800--Sobic004G212200 Sobic003G274800--Sobic010G000900 Sobic003G274800--Sobic003G261400 Sobic003G274800--Sobic002G393500 Sobic001G283200 Sobic001G283200 Sobic003G274800--Sobic001G283200 Sobic003G274800--Sobic003G261500 Sobic003G012200 Sobic003G012200 Sobic003G274800--Sobic003G012200 Sobic003G077900 Sobic003G077900 Sobic003G274800--Sobic003G077900 Sobic003G274800--Sobic001G047400 Sobic002G178601--Sobic002G393500 Sobic008G133600 Sobic008G133600 Sobic002G178601--Sobic008G133600 Sobic003G344900 Sobic003G344900 Sobic002G178601--Sobic003G344900 Sobic003G239800 Sobic003G239800 Sobic002G178601--Sobic003G239800 Sobic002G178601--Sobic009G228800 Sobic003G015900 Sobic003G015900 Sobic002G178601--Sobic003G015900 Sobic001G113000 Sobic001G113000 Sobic002G178601--Sobic001G113000 Sobic004G235000 Sobic004G235000 Sobic002G178601--Sobic004G235000 Sobic002G430800 Sobic002G430800 Sobic002G178601--Sobic002G430800 Sobic001G073000 Sobic001G073000 Sobic009G228800--Sobic001G073000 Sobic009G228800--Sobic004G212200 Sobic007G203700 Sobic007G203700 Sobic009G228800--Sobic007G203700 Sobic009G228800--Sobic003G015900 Sobic009G228800--Sobic010G000900 Sobic003G248600 Sobic003G248600 Sobic009G228800--Sobic003G248600 Sobic009G228800--Sobic001G512300 Sobic004G356900 Sobic004G356900 Sobic009G228800--Sobic004G356900 Sobic009G228800--Sobic002G393500 Sobic002G400000 Sobic002G400000 Sobic010G000900--Sobic002G400000 Sobic010G000900--Sobic003G012200 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic004G130900 Sobic004G130900 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic001G047400--Sobic010G000900 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic001G047400--Sobic003G015900 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic009G075800 Sobic009G075800 Sobic002G226900--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic002G226900--Sobic004G275700 Sobic002G226900--Sobic003G012200 Sobic001G199100 Sobic001G199100 Sobic002G226900--Sobic001G199100 Sobic009G217100 Sobic009G217100 Sobic002G226900--Sobic009G217100 Sobic003G365300 Sobic003G365300 Sobic002G226900--Sobic003G365300 Sobic002G226900--Sobic010G251000 Sobic002G226900--Sobic010G000900 Sobic001G203900 Sobic001G203900 Sobic002G226900--Sobic001G203900 Sobic001G021300--Sobic002G393500 Sobic004G216400 Sobic004G216400 Sobic001G021300--Sobic004G216400 Sobic005G003800 Sobic005G003800 Sobic001G021300--Sobic005G003800 Sobic007G100425 Sobic007G100425 Sobic001G021300--Sobic007G100425 Sobic003G063300 Sobic003G063300 Sobic001G021300--Sobic003G063300 Sobic004G094200 Sobic004G094200 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic006G252200 Sobic006G252200 Sobic001G021300--Sobic006G252200 Sobic009G257600 Sobic009G257600 Sobic001G021300--Sobic009G257600 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900
Octagon: transcription factors


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