Gene annotation
Transcriptome id Sobic.001G021300.1
Synonym LOS1
Functional annotation elongation factor, putative, expressed
UniProt A0A1B6QGY0
Pfam PF14492 PF03144 PF00679 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF131
NCBI CDD -
KEGG Orthology K03234; elongation factor 2
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G56070 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os04g02820.1 : elongation factor, putative, expressed
MaizeGDB (Corn) Zm00025a040074 , Zm00025a008947 , Zm00025a052101 , Zm00025a008954 , Zm00025a008952
Brachypodium KQJ99646 , KQJ99645 , KQK08953 , KQJ99594 , KQJ99595 , PNT72487
Barley HORVU7Hr1G106150.4 , HORVU7Hr1G106150.5 , HORVU5Hr1G116580.10 , HORVU5Hr1G116580.11 , HORVU5Hr1G116580.12 , HORVU5Hr1G116710.9 , HORVU5Hr1G116710.8 , HORVU7Hr1G106150.2 , HORVU7Hr1G106150.3 , HORVU7Hr1G106150.1 , HORVU5Hr1G116710.3 , HORVU5Hr1G116710.2 , HORVU5Hr1G116710.1 , HORVU5Hr1G116710.7 , HORVU5Hr1G116710.6 , HORVU5Hr1G116710.5 , HORVU5Hr1G116710.4 , HORVU5Hr1G116580.6 , HORVU5Hr1G116580.7 , HORVU5Hr1G116580.4 , HORVU5Hr1G116580.5 , HORVU5Hr1G116580.2 , HORVU5Hr1G116580.3 , HORVU5Hr1G116580.1 , HORVU5Hr1G116580.8 , HORVU3Hr1G057880.1 , HORVU3Hr1G057880.3 , HORVU3Hr1G057880.2 , HORVU3Hr1G057890.2 , HORVU3Hr1G057890.3 , HORVU3Hr1G057890.1 , HORVU5Hr1G116580.9
Wheat TraesCS3A02G232300 , TraesCS4A02G363800 , TraesCS7A02G461100 , TraesCS3B02G261500 , TraesCS5D02G509600 , TraesCS5D02G509800 , TraesCS4A02G363700 , TraesCS2A02G234500 , TraesCS7A02G288600 , TraesCS5B02G509500 , TraesCS3D02G220900 , TraesCS1D02G023700 , TraesCS5D02G509700 , TraesCS6A02G189500 , TraesCS5B02G509600 , TraesCS5B02G509700 , TraesCS7D02G449300 , TraesCS7B02G362600
Populus PNT35884 , PNT27456 , PNT27457 , PNT27458 , PNT27459


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G393500 expressed protein -
2 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
3 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
4 Sobic.007G100425 - -
5 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
6 Sobic.004G094200 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
7 Sobic.001G110400 - -
8 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
9 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
10 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
11 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
12 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
13 Sobic.002G084500 expressed protein -
14 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
15 Sobic.003G261400 DUF292 domain containing protein, expressed -
16 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
17 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
18 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
19 Sobic.002G300300 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
20 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2


Gene co-expression network
sample Sobic001G021300 Sobic001G021300 Sobic002G393500 Sobic002G393500 Sobic001G021300--Sobic002G393500 Sobic004G216400 Sobic004G216400 Sobic001G021300--Sobic004G216400 Sobic005G003800 Sobic005G003800 Sobic001G021300--Sobic005G003800 Sobic007G100425 Sobic007G100425 Sobic001G021300--Sobic007G100425 Sobic003G063300 Sobic003G063300 Sobic001G021300--Sobic003G063300 Sobic004G094200 Sobic004G094200 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic006G252200 Sobic006G252200 Sobic001G021300--Sobic006G252200 Sobic009G257600 Sobic009G257600 Sobic001G021300--Sobic009G257600 Sobic004G212200 Sobic004G212200 Sobic002G393500--Sobic004G212200 Sobic003G274800 Sobic003G274800 Sobic002G393500--Sobic003G274800 Sobic002G178601 Sobic002G178601 Sobic002G393500--Sobic002G178601 Sobic009G228800 Sobic009G228800 Sobic002G393500--Sobic009G228800 Sobic010G000900 Sobic010G000900 Sobic002G393500--Sobic010G000900 Sobic001G047400 Sobic001G047400 Sobic002G393500--Sobic001G047400 Sobic002G226900 Sobic002G226900 Sobic002G393500--Sobic002G226900 Sobic002G393500--Sobic001G021300 Sobic003G261400 Sobic003G261400 Sobic002G393500--Sobic003G261400 Sobic010G262433 Sobic010G262433 Sobic004G216400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G310500 Sobic004G310500 Sobic004G216400--Sobic004G310500 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic008G004000 Sobic008G004000 Sobic005G003800--Sobic008G004000 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic010G100000 Sobic010G100000 Sobic005G003800--Sobic010G100000 Sobic001G481700 Sobic001G481700 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic010G046300 Sobic010G046300 Sobic005G003800--Sobic010G046300 Sobic004G216800 Sobic004G216800 Sobic007G100425--Sobic004G216800 Sobic004G224900 Sobic004G224900 Sobic007G100425--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic007G100425--Sobic008G132400 Sobic001G074300 Sobic001G074300 Sobic007G100425--Sobic001G074300 Sobic001G048832 Sobic001G048832 Sobic007G100425--Sobic001G048832 Sobic001G005900 Sobic001G005900 Sobic007G100425--Sobic001G005900 Sobic004G138800 Sobic004G138800 Sobic007G100425--Sobic004G138800 Sobic007G100425--Sobic003G063300 Sobic002G364500 Sobic002G364500 Sobic007G100425--Sobic002G364500 Sobic003G063300--Sobic001G074300 Sobic003G063300--Sobic004G216800 Sobic003G063300--Sobic007G100425 Sobic003G063300--Sobic002G364500 Sobic003G063300--Sobic001G005900 Sobic003G063300--Sobic002G364100 Sobic004G225500 Sobic004G225500 Sobic003G063300--Sobic004G225500 Sobic003G063300--Sobic001G018800 Sobic002G371100 Sobic002G371100 Sobic003G063300--Sobic002G371100 Sobic010G103900 Sobic010G103900 Sobic004G094200--Sobic010G103900 Sobic004G094200--Sobic001G021300 Sobic004G094200--Sobic001G468600 Sobic004G094200--Sobic004G216400 Sobic004G094200--Sobic003G063300 Sobic001G219300 Sobic001G219300 Sobic004G094200--Sobic001G219300 Sobic007G071300 Sobic007G071300 Sobic004G094200--Sobic007G071300 Sobic004G094200--Sobic007G100425 Sobic002G332900 Sobic002G332900 Sobic004G094200--Sobic002G332900 Sobic006G002700 Sobic006G002700 Sobic001G110400--Sobic006G002700 Sobic001G230100 Sobic001G230100 Sobic001G110400--Sobic001G230100 Sobic001G007600 Sobic001G007600 Sobic001G110400--Sobic001G007600 Sobic009G104000 Sobic009G104000 Sobic001G110400--Sobic009G104000 Sobic001G110400--Sobic006G252200 Sobic010G038700 Sobic010G038700 Sobic001G110400--Sobic010G038700 Sobic001G110400--Sobic004G224900 Sobic001G110400--Sobic001G005900 Sobic001G110400--Sobic001G021300 Sobic007G176200 Sobic007G176200 Sobic006G252200--Sobic007G176200 Sobic001G458700 Sobic001G458700 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic009G257600--Sobic001G283200 Sobic004G321900 Sobic004G321900 Sobic009G257600--Sobic004G321900 Sobic002G166900 Sobic002G166900 Sobic009G257600--Sobic002G166900 Sobic009G257600--Sobic004G310500 Sobic009G005900 Sobic009G005900 Sobic009G257600--Sobic009G005900 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic004G082900 Sobic004G082900 Sobic009G257600--Sobic004G082900 Sobic009G257600--Sobic004G216400
Octagon: transcription factors


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