Gene annotation
Transcriptome id Sobic.002G300300.2
Synonym Sb02g033090
Functional annotation rRNA-processing protein EBP2, putative, expressed
UniProt C5X8H8
Pfam PF05890
Panther DB PTHR13028 PTHR13028:SF0
NCBI CDD KOG3080; Nucleolar protein-like/EBNA1-binding protein
KEGG Orthology K14823; EBP2, rRNA-processing protein EBP2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22660 : rRNA processing protein-related
RAP-DB (Rice) LOC_Os07g29320.1 : rRNA-processing protein EBP2, putative, expressed
MaizeGDB (Corn) Zm00025a014617 , Zm00025a019399
Brachypodium KQK12551
Barley -
Wheat TraesCS4B02G306000 , TraesCS7D02G125500 , TraesCS4D02G304200 , TraesCS4A02G406500
Populus -


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cDNA sequences
Sobic.002G300300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
2 Sobic.002G084500 expressed protein -
3 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
4 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
5 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
6 Sobic.009G213500 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
7 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
8 Sobic.004G352200 expressed protein -
9 Sobic.004G061800 dimethyladenosine transferase, putative, expressed K14191: 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase
10 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
11 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
12 Sobic.001G408900 OsPDIL5-1 protein disulfide isomerase PDIL5-1, expressed -
13 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
14 Sobic.002G178601 - -
15 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
16 Sobic.003G320200 pentatricopeptide containing protein, putative, expressed -
17 Sobic.002G393500 expressed protein -
18 Sobic.001G524500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
19 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
20 Sobic.002G288900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G300300 Sobic002G300300 Sobic002G419100 Sobic002G419100 Sobic002G300300--Sobic002G419100 Sobic002G084500 Sobic002G084500 Sobic002G300300--Sobic002G084500 Sobic001G021300 Sobic001G021300 Sobic002G300300--Sobic001G021300 Sobic004G020000 Sobic004G020000 Sobic002G300300--Sobic004G020000 Sobic005G003800 Sobic005G003800 Sobic002G300300--Sobic005G003800 Sobic009G213500 Sobic009G213500 Sobic002G300300--Sobic009G213500 Sobic004G216400 Sobic004G216400 Sobic002G300300--Sobic004G216400 Sobic004G352200 Sobic004G352200 Sobic002G300300--Sobic004G352200 Sobic004G061800 Sobic004G061800 Sobic002G300300--Sobic004G061800 Sobic002G419100--Sobic009G213500 Sobic010G205300 Sobic010G205300 Sobic002G419100--Sobic010G205300 Sobic003G186700 Sobic003G186700 Sobic002G419100--Sobic003G186700 Sobic002G419100--Sobic002G084500 Sobic002G341800 Sobic002G341800 Sobic002G419100--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic006G252200 Sobic006G252200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic001G408900 Sobic001G408900 Sobic002G084500--Sobic001G408900 Sobic001G433700 Sobic001G433700 Sobic002G084500--Sobic001G433700 Sobic001G331900 Sobic001G331900 Sobic002G084500--Sobic001G331900 Sobic004G284500 Sobic004G284500 Sobic002G084500--Sobic004G284500 Sobic002G084500--Sobic002G419100 Sobic002G153500 Sobic002G153500 Sobic002G084500--Sobic002G153500 Sobic006G141500 Sobic006G141500 Sobic002G084500--Sobic006G141500 Sobic008G189300 Sobic008G189300 Sobic002G084500--Sobic008G189300 Sobic009G146100 Sobic009G146100 Sobic002G084500--Sobic009G146100 Sobic002G393500 Sobic002G393500 Sobic001G021300--Sobic002G393500 Sobic001G021300--Sobic004G216400 Sobic001G021300--Sobic005G003800 Sobic007G100425 Sobic007G100425 Sobic001G021300--Sobic007G100425 Sobic003G063300 Sobic003G063300 Sobic001G021300--Sobic003G063300 Sobic004G094200 Sobic004G094200 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic001G021300--Sobic006G252200 Sobic009G257600 Sobic009G257600 Sobic001G021300--Sobic009G257600 Sobic005G034400 Sobic005G034400 Sobic004G020000--Sobic005G034400 Sobic003G220600 Sobic003G220600 Sobic004G020000--Sobic003G220600 Sobic002G045300 Sobic002G045300 Sobic004G020000--Sobic002G045300 Sobic002G083266 Sobic002G083266 Sobic004G020000--Sobic002G083266 Sobic001G440700 Sobic001G440700 Sobic004G020000--Sobic001G440700 Sobic010G042100 Sobic010G042100 Sobic004G020000--Sobic010G042100 Sobic006G264300 Sobic006G264300 Sobic004G020000--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic004G020000--Sobic001G415000 Sobic004G020000--Sobic002G153500 Sobic008G004000 Sobic008G004000 Sobic005G003800--Sobic008G004000 Sobic009G190300 Sobic009G190300 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic010G100000 Sobic010G100000 Sobic005G003800--Sobic010G100000 Sobic001G481700 Sobic001G481700 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic010G046300 Sobic010G046300 Sobic005G003800--Sobic010G046300 Sobic009G213500--Sobic002G419100 Sobic009G213500--Sobic004G216400 Sobic003G312200 Sobic003G312200 Sobic009G213500--Sobic003G312200 Sobic002G071000 Sobic002G071000 Sobic009G213500--Sobic002G071000 Sobic001G283200 Sobic001G283200 Sobic009G213500--Sobic001G283200 Sobic009G213500--Sobic003G186700 Sobic010G002400 Sobic010G002400 Sobic009G213500--Sobic010G002400 Sobic009G075800 Sobic009G075800 Sobic009G213500--Sobic009G075800 Sobic002G262000 Sobic002G262000 Sobic009G213500--Sobic002G262000 Sobic010G262433 Sobic010G262433 Sobic004G216400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic004G216400--Sobic001G468600 Sobic004G216400--Sobic002G341800 Sobic004G216400--Sobic001G283200 Sobic004G216400--Sobic004G310500 Sobic004G216400--Sobic001G021300 Sobic004G216400--Sobic009G190300 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic003G160900 Sobic003G160900 Sobic004G352200--Sobic003G160900 Sobic003G044400 Sobic003G044400 Sobic004G352200--Sobic003G044400 Sobic001G117400 Sobic001G117400 Sobic004G352200--Sobic001G117400 Sobic002G371100 Sobic002G371100 Sobic004G352200--Sobic002G371100 Sobic004G352200--Sobic003G063300 Sobic004G352200--Sobic001G018800 Sobic004G069500 Sobic004G069500 Sobic004G352200--Sobic004G069500 Sobic003G127700 Sobic003G127700 Sobic004G352200--Sobic003G127700 Sobic004G352200--Sobic001G331900 Sobic004G061800--Sobic001G440700 Sobic001G288800 Sobic001G288800 Sobic004G061800--Sobic001G288800 Sobic004G061800--Sobic002G371100 Sobic001G491100 Sobic001G491100 Sobic004G061800--Sobic001G491100 Sobic002G078400 Sobic002G078400 Sobic004G061800--Sobic002G078400 Sobic004G103700 Sobic004G103700 Sobic004G061800--Sobic004G103700 Sobic004G061800--Sobic004G020000 Sobic007G091000 Sobic007G091000 Sobic004G061800--Sobic007G091000 Sobic004G061800--Sobic009G232000
Octagon: transcription factors


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