Gene annotation
Transcriptome id Sobic.003G320200.1
Synonym Sb03g036710
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt C5XLS8
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF893
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13160 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g57630.2 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039876
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
2 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
3 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
4 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
5 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
6 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
7 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
8 Sobic.002G300300 rRNA-processing protein EBP2, putative, expressed K14823: EBP2, rRNA-processing protein EBP2
9 Sobic.010G213200 WD domain, G-beta repeat domain containing protein, expressed K12857: SNRNP40, Prp8 binding protein
10 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
11 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14
12 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
13 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
14 Sobic.002G243200 similar to Heat shock protein 81-2(PubMedID : 29862293)@-(PubMedID : 29751546)@-(PubMedID : 29751546)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG
15 Sobic.001G214200 lysM domain containing protein, putative, expressed -
16 Sobic.001G288800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
17 Sobic.010G026700 cornichon protein, putative, expressed -
18 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
19 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
20 Sobic.004G062400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F


Gene co-expression network
sample Sobic003G320200 Sobic003G320200 Sobic009G219400 Sobic009G219400 Sobic003G320200--Sobic009G219400 Sobic005G003800 Sobic005G003800 Sobic003G320200--Sobic005G003800 Sobic005G091700 Sobic005G091700 Sobic003G320200--Sobic005G091700 Sobic010G046300 Sobic010G046300 Sobic003G320200--Sobic010G046300 Sobic008G004000 Sobic008G004000 Sobic003G320200--Sobic008G004000 Sobic002G413400 Sobic002G413400 Sobic003G320200--Sobic002G413400 Sobic002G419100 Sobic002G419100 Sobic003G320200--Sobic002G419100 Sobic002G300300 Sobic002G300300 Sobic003G320200--Sobic002G300300 Sobic010G213200 Sobic010G213200 Sobic003G320200--Sobic010G213200 Sobic002G394600 Sobic002G394600 Sobic009G219400--Sobic002G394600 Sobic009G222900 Sobic009G222900 Sobic009G219400--Sobic009G222900 Sobic009G219400--Sobic005G003800 Sobic004G310500 Sobic004G310500 Sobic009G219400--Sobic004G310500 Sobic009G190300 Sobic009G190300 Sobic009G219400--Sobic009G190300 Sobic002G243200 Sobic002G243200 Sobic009G219400--Sobic002G243200 Sobic001G050700 Sobic001G050700 Sobic009G219400--Sobic001G050700 Sobic008G016100 Sobic008G016100 Sobic009G219400--Sobic008G016100 Sobic002G341800 Sobic002G341800 Sobic009G219400--Sobic002G341800 Sobic005G003800--Sobic008G004000 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic010G100000 Sobic010G100000 Sobic005G003800--Sobic010G100000 Sobic001G481700 Sobic001G481700 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic005G003800--Sobic010G046300 Sobic001G513500 Sobic001G513500 Sobic005G091700--Sobic001G513500 Sobic005G091700--Sobic010G100000 Sobic009G101700 Sobic009G101700 Sobic005G091700--Sobic009G101700 Sobic005G091700--Sobic001G018800 Sobic003G129800 Sobic003G129800 Sobic005G091700--Sobic003G129800 Sobic002G331300 Sobic002G331300 Sobic005G091700--Sobic002G331300 Sobic009G179100 Sobic009G179100 Sobic005G091700--Sobic009G179100 Sobic001G011200 Sobic001G011200 Sobic005G091700--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic005G091700--Sobic005G050500 Sobic010G046300--Sobic001G481700 Sobic010G151000 Sobic010G151000 Sobic010G046300--Sobic010G151000 Sobic008G073300 Sobic008G073300 Sobic010G046300--Sobic008G073300 Sobic002G113800 Sobic002G113800 Sobic010G046300--Sobic002G113800 Sobic007G045600 Sobic007G045600 Sobic010G046300--Sobic007G045600 Sobic010G046300--Sobic005G003800 Sobic007G118000 Sobic007G118000 Sobic010G046300--Sobic007G118000 Sobic006G220700 Sobic006G220700 Sobic010G046300--Sobic006G220700 Sobic004G224900 Sobic004G224900 Sobic010G046300--Sobic004G224900 Sobic008G004000--Sobic005G003800 Sobic008G004000--Sobic009G232000 Sobic008G004000--Sobic009G190300 Sobic008G004000--Sobic009G065400 Sobic008G004000--Sobic001G018800 Sobic008G004000--Sobic001G011200 Sobic001G216200 Sobic001G216200 Sobic008G004000--Sobic001G216200 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500 Sobic001G402300 Sobic001G402300 Sobic002G413400--Sobic001G402300 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic009G213500 Sobic009G213500 Sobic002G419100--Sobic009G213500 Sobic010G205300 Sobic010G205300 Sobic002G419100--Sobic010G205300 Sobic003G186700 Sobic003G186700 Sobic002G419100--Sobic003G186700 Sobic002G084500 Sobic002G084500 Sobic002G419100--Sobic002G084500 Sobic002G419100--Sobic002G341800 Sobic002G419100--Sobic004G310500 Sobic004G212200 Sobic004G212200 Sobic002G419100--Sobic004G212200 Sobic006G252200 Sobic006G252200 Sobic002G419100--Sobic006G252200 Sobic003G349300 Sobic003G349300 Sobic002G419100--Sobic003G349300 Sobic002G300300--Sobic002G419100 Sobic002G300300--Sobic002G084500 Sobic001G021300 Sobic001G021300 Sobic002G300300--Sobic001G021300 Sobic004G020000 Sobic004G020000 Sobic002G300300--Sobic004G020000 Sobic002G300300--Sobic005G003800 Sobic002G300300--Sobic009G213500 Sobic004G216400 Sobic004G216400 Sobic002G300300--Sobic004G216400 Sobic004G352200 Sobic004G352200 Sobic002G300300--Sobic004G352200 Sobic004G061800 Sobic004G061800 Sobic002G300300--Sobic004G061800 Sobic004G062400 Sobic004G062400 Sobic010G213200--Sobic004G062400 Sobic010G213200--Sobic001G481700 Sobic010G213200--Sobic010G100000 Sobic007G152400 Sobic007G152400 Sobic010G213200--Sobic007G152400 Sobic010G213200--Sobic005G050500 Sobic002G428200 Sobic002G428200 Sobic010G213200--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic010G213200--Sobic002G257400 Sobic001G517600 Sobic001G517600 Sobic010G213200--Sobic001G517600 Sobic010G213200--Sobic004G224900
Octagon: transcription factors


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