Gene annotation
Transcriptome id Sobic.001G214200.1
Synonym Sb01g018900
Functional annotation lysM domain containing protein, putative, expressed
UniProt C5WYB0
Pfam PF01476
Panther DB PTHR20932 PTHR20932:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23130 : Peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os10g34420.1 : lysM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017559 , Zm00025a006554
Brachypodium -
Barley -
Wheat TraesCS1A02G160800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G214200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G026700 cornichon protein, putative, expressed -
2 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
3 Sobic.001G050400 expressed protein -
4 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
5 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
6 Sobic.001G408100 Yip1 domain containing protein, expressed -
7 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
8 Sobic.002G214900 polygalacturonase, putative, expressed -
9 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
10 Sobic.001G050700 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
11 Sobic.001G409900 transporter, putative, expressed -
12 Sobic.004G350300 No apical meristem protein, putative, expressed -
13 Sobic.003G217100 Yip1 domain containing protein, expressed -
14 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
15 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
16 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
17 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
18 Sobic.002G261900 arabinogalactan protein, putative, expressed -
19 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
20 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein


Gene co-expression network
sample Sobic001G214200 Sobic001G214200 Sobic010G026700 Sobic010G026700 Sobic001G214200--Sobic010G026700 Sobic001G122500 Sobic001G122500 Sobic001G214200--Sobic001G122500 Sobic001G050400 Sobic001G050400 Sobic001G214200--Sobic001G050400 Sobic003G023500 Sobic003G023500 Sobic001G214200--Sobic003G023500 Sobic002G395600 Sobic002G395600 Sobic001G214200--Sobic002G395600 Sobic001G408100 Sobic001G408100 Sobic001G214200--Sobic001G408100 Sobic010G017000 Sobic010G017000 Sobic001G214200--Sobic010G017000 Sobic002G214900 Sobic002G214900 Sobic001G214200--Sobic002G214900 Sobic010G235200 Sobic010G235200 Sobic001G214200--Sobic010G235200 Sobic003G104700 Sobic003G104700 Sobic010G026700--Sobic003G104700 Sobic010G026700--Sobic001G214200 Sobic002G261900 Sobic002G261900 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic001G311100 Sobic001G311100 Sobic010G026700--Sobic001G311100 Sobic003G023000 Sobic003G023000 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic003G349300 Sobic003G349300 Sobic010G026700--Sobic003G349300 Sobic006G217300 Sobic006G217300 Sobic001G122500--Sobic006G217300 Sobic001G122500--Sobic001G214200 Sobic004G350300 Sobic004G350300 Sobic001G122500--Sobic004G350300 Sobic006G263100 Sobic006G263100 Sobic001G122500--Sobic006G263100 Sobic010G188100 Sobic010G188100 Sobic001G122500--Sobic010G188100 Sobic003G002400 Sobic003G002400 Sobic001G122500--Sobic003G002400 Sobic001G122500--Sobic010G026700 Sobic001G409900 Sobic001G409900 Sobic001G122500--Sobic001G409900 Sobic001G122500--Sobic002G214900 Sobic004G039400 Sobic004G039400 Sobic001G050400--Sobic004G039400 Sobic002G401700 Sobic002G401700 Sobic001G050400--Sobic002G401700 Sobic007G012900 Sobic007G012900 Sobic001G050400--Sobic007G012900 Sobic001G008100 Sobic001G008100 Sobic001G050400--Sobic001G008100 Sobic001G050400--Sobic001G214200 Sobic001G178500 Sobic001G178500 Sobic001G050400--Sobic001G178500 Sobic001G443200 Sobic001G443200 Sobic001G050400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic001G050400--Sobic002G262200 Sobic010G040900 Sobic010G040900 Sobic001G050400--Sobic010G040900 Sobic004G222600 Sobic004G222600 Sobic003G023500--Sobic004G222600 Sobic003G217100 Sobic003G217100 Sobic003G023500--Sobic003G217100 Sobic003G023500--Sobic002G214900 Sobic003G023500--Sobic001G214200 Sobic003G023500--Sobic001G409900 Sobic009G191600 Sobic009G191600 Sobic003G023500--Sobic009G191600 Sobic006G222400 Sobic006G222400 Sobic003G023500--Sobic006G222400 Sobic004G054300 Sobic004G054300 Sobic003G023500--Sobic004G054300 Sobic002G376500 Sobic002G376500 Sobic003G023500--Sobic002G376500 Sobic002G395600--Sobic006G263100 Sobic003G392200 Sobic003G392200 Sobic002G395600--Sobic003G392200 Sobic002G395600--Sobic001G214200 Sobic002G330300 Sobic002G330300 Sobic002G395600--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G395600--Sobic007G178200 Sobic002G395600--Sobic010G017000 Sobic004G026200 Sobic004G026200 Sobic002G395600--Sobic004G026200 Sobic004G280800 Sobic004G280800 Sobic002G395600--Sobic004G280800 Sobic001G283500 Sobic001G283500 Sobic002G395600--Sobic001G283500 Sobic001G408100--Sobic003G217100 Sobic003G052400 Sobic003G052400 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic001G408100--Sobic006G222400 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic010G017000--Sobic003G052400 Sobic009G160200 Sobic009G160200 Sobic010G017000--Sobic009G160200 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic007G114200 Sobic007G114200 Sobic002G214900--Sobic007G114200 Sobic006G182100 Sobic006G182100 Sobic002G214900--Sobic006G182100 Sobic002G214900--Sobic001G409900 Sobic003G368500 Sobic003G368500 Sobic002G214900--Sobic003G368500 Sobic007G115100 Sobic007G115100 Sobic002G214900--Sobic007G115100 Sobic001G403700 Sobic001G403700 Sobic002G214900--Sobic001G403700 Sobic001G224400 Sobic001G224400 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400 Sobic004G307600 Sobic004G307600 Sobic010G235200--Sobic004G307600 Sobic004G228800 Sobic004G228800 Sobic010G235200--Sobic004G228800 Sobic007G093800 Sobic007G093800 Sobic010G235200--Sobic007G093800 Sobic010G264000 Sobic010G264000 Sobic010G235200--Sobic010G264000 Sobic008G124900 Sobic008G124900 Sobic010G235200--Sobic008G124900 Sobic004G323700 Sobic004G323700 Sobic010G235200--Sobic004G323700 Sobic009G131900 Sobic009G131900 Sobic010G235200--Sobic009G131900 Sobic002G303600 Sobic002G303600 Sobic010G235200--Sobic002G303600 Sobic003G312200 Sobic003G312200 Sobic010G235200--Sobic003G312200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.