Gene annotation
Transcriptome id Sobic.001G122500.1
Synonym Sb01g010770
Functional annotation SNARE associated Golgi protein, putative, expressed
UniProt C5WNS3
Pfam PF09335
Panther DB PTHR12677 PTHR12677:SF29
NCBI CDD KOG3140; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G09580 : SNARE associated Golgi protein family
RAP-DB (Rice) LOC_Os03g49700.1 : SNARE associated Golgi protein, putative, expressed
MaizeGDB (Corn) Zm00025a007768
Brachypodium KQK13562
Barley HORVU4Hr1G006740.1
Wheat TraesCS4D02G039000 , TraesCS4A02G272200 , TraesCS4B02G041800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G217300 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12448: UXE, UDP-arabinose 4-epimerase
2 Sobic.001G214200 lysM domain containing protein, putative, expressed -
3 Sobic.004G350300 No apical meristem protein, putative, expressed -
4 Sobic.006G263100 expressed protein -
5 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
7 Sobic.010G026700 cornichon protein, putative, expressed -
8 Sobic.001G409900 transporter, putative, expressed -
9 Sobic.002G214900 polygalacturonase, putative, expressed -
10 Sobic.002G159300 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
11 Sobic.003G043800 BT1 family protein, putative, expressed -
12 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
13 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
14 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
15 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
16 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
17 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
18 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
19 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
20 Sobic.002G083266 - K00326: cytochrome-b5 reductase


Gene co-expression network
sample Sobic001G122500 Sobic001G122500 Sobic006G217300 Sobic006G217300 Sobic001G122500--Sobic006G217300 Sobic001G214200 Sobic001G214200 Sobic001G122500--Sobic001G214200 Sobic004G350300 Sobic004G350300 Sobic001G122500--Sobic004G350300 Sobic006G263100 Sobic006G263100 Sobic001G122500--Sobic006G263100 Sobic010G188100 Sobic010G188100 Sobic001G122500--Sobic010G188100 Sobic003G002400 Sobic003G002400 Sobic001G122500--Sobic003G002400 Sobic010G026700 Sobic010G026700 Sobic001G122500--Sobic010G026700 Sobic001G409900 Sobic001G409900 Sobic001G122500--Sobic001G409900 Sobic002G214900 Sobic002G214900 Sobic001G122500--Sobic002G214900 Sobic006G217300--Sobic001G122500 Sobic006G207900 Sobic006G207900 Sobic006G217300--Sobic006G207900 Sobic007G026800 Sobic007G026800 Sobic006G217300--Sobic007G026800 Sobic003G043800 Sobic003G043800 Sobic006G217300--Sobic003G043800 Sobic010G064600 Sobic010G064600 Sobic006G217300--Sobic010G064600 Sobic001G312500 Sobic001G312500 Sobic006G217300--Sobic001G312500 Sobic002G431000 Sobic002G431000 Sobic006G217300--Sobic002G431000 Sobic010G184300 Sobic010G184300 Sobic006G217300--Sobic010G184300 Sobic004G228800 Sobic004G228800 Sobic006G217300--Sobic004G228800 Sobic001G214200--Sobic010G026700 Sobic001G214200--Sobic001G122500 Sobic001G050400 Sobic001G050400 Sobic001G214200--Sobic001G050400 Sobic003G023500 Sobic003G023500 Sobic001G214200--Sobic003G023500 Sobic002G395600 Sobic002G395600 Sobic001G214200--Sobic002G395600 Sobic001G408100 Sobic001G408100 Sobic001G214200--Sobic001G408100 Sobic010G017000 Sobic010G017000 Sobic001G214200--Sobic010G017000 Sobic001G214200--Sobic002G214900 Sobic010G235200 Sobic010G235200 Sobic001G214200--Sobic010G235200 Sobic004G350300--Sobic003G002400 Sobic001G434900 Sobic001G434900 Sobic004G350300--Sobic001G434900 Sobic003G248600 Sobic003G248600 Sobic004G350300--Sobic003G248600 Sobic004G321900 Sobic004G321900 Sobic004G350300--Sobic004G321900 Sobic004G183400 Sobic004G183400 Sobic004G350300--Sobic004G183400 Sobic004G350300--Sobic001G122500 Sobic002G045300 Sobic002G045300 Sobic004G350300--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic004G350300--Sobic001G433400 Sobic004G274400 Sobic004G274400 Sobic004G350300--Sobic004G274400 Sobic004G280800 Sobic004G280800 Sobic006G263100--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic006G263100--Sobic010G246000 Sobic001G290400 Sobic001G290400 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic001G147200 Sobic001G147200 Sobic006G263100--Sobic001G147200 Sobic002G294700 Sobic002G294700 Sobic006G263100--Sobic002G294700 Sobic010G228000 Sobic010G228000 Sobic006G263100--Sobic010G228000 Sobic006G263100--Sobic001G409900 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic003G077900 Sobic003G077900 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic003G002400--Sobic004G350300 Sobic003G002400--Sobic004G274400 Sobic003G002400--Sobic001G434900 Sobic003G002400--Sobic002G045300 Sobic003G220600 Sobic003G220600 Sobic003G002400--Sobic003G220600 Sobic004G271700 Sobic004G271700 Sobic003G002400--Sobic004G271700 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic003G002400--Sobic010G101500 Sobic003G104700 Sobic003G104700 Sobic010G026700--Sobic003G104700 Sobic010G026700--Sobic001G214200 Sobic002G261900 Sobic002G261900 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic001G311100 Sobic001G311100 Sobic010G026700--Sobic001G311100 Sobic003G023000 Sobic003G023000 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic003G349300 Sobic003G349300 Sobic010G026700--Sobic003G349300 Sobic001G409900--Sobic002G214900 Sobic001G409900--Sobic006G263100 Sobic001G173300 Sobic001G173300 Sobic001G409900--Sobic001G173300 Sobic004G278000 Sobic004G278000 Sobic001G409900--Sobic004G278000 Sobic009G208800 Sobic009G208800 Sobic001G409900--Sobic009G208800 Sobic002G362900 Sobic002G362900 Sobic001G409900--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic001G409900--Sobic007G188100 Sobic001G409900--Sobic001G122500 Sobic001G409900--Sobic003G023500 Sobic007G114200 Sobic007G114200 Sobic002G214900--Sobic007G114200 Sobic006G182100 Sobic006G182100 Sobic002G214900--Sobic006G182100 Sobic002G214900--Sobic001G409900 Sobic003G368500 Sobic003G368500 Sobic002G214900--Sobic003G368500 Sobic007G115100 Sobic007G115100 Sobic002G214900--Sobic007G115100 Sobic001G403700 Sobic001G403700 Sobic002G214900--Sobic001G403700 Sobic001G224400 Sobic001G224400 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400
Octagon: transcription factors


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