Gene annotation
Transcriptome id Sobic.001G041100.1
Synonym Sb01g003790
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WVZ7
Pfam PF00076
Panther DB PTHR12785
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K12833; pre-mRNA branch site protein p14
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G12190 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g59710.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016472 , Zm00025a008741
Brachypodium KQK12523 , KQK12522
Barley HORVU5Hr1G111400.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G041100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
2 Sobic.006G141500 expressed protein -
3 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
4 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
5 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
6 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
7 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
8 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
9 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
10 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
11 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
12 Sobic.002G280200 Skp1 family, dimerisation domain containing protein, expressed K03094: SKP1, S-phase kinase-associated protein 1
13 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
14 Sobic.006G139700 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
15 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
16 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
17 Sobic.007G068000 postsynaptic protein CRIPT, putative, expressed -
18 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
19 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
20 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1


Gene co-expression network
sample Sobic001G041100 Sobic001G041100 Sobic004G265700 Sobic004G265700 Sobic001G041100--Sobic004G265700 Sobic006G141500 Sobic006G141500 Sobic001G041100--Sobic006G141500 Sobic010G163600 Sobic010G163600 Sobic001G041100--Sobic010G163600 Sobic003G362400 Sobic003G362400 Sobic001G041100--Sobic003G362400 Sobic001G066700 Sobic001G066700 Sobic001G041100--Sobic001G066700 Sobic010G213400 Sobic010G213400 Sobic001G041100--Sobic010G213400 Sobic006G010600 Sobic006G010600 Sobic001G041100--Sobic006G010600 Sobic009G191600 Sobic009G191600 Sobic001G041100--Sobic009G191600 Sobic007G203700 Sobic007G203700 Sobic001G041100--Sobic007G203700 Sobic005G111100 Sobic005G111100 Sobic004G265700--Sobic005G111100 Sobic002G078400 Sobic002G078400 Sobic004G265700--Sobic002G078400 Sobic004G265700--Sobic001G041100 Sobic004G265700--Sobic003G362400 Sobic004G265700--Sobic006G141500 Sobic010G065400 Sobic010G065400 Sobic004G265700--Sobic010G065400 Sobic002G116200 Sobic002G116200 Sobic004G265700--Sobic002G116200 Sobic002G222900 Sobic002G222900 Sobic004G265700--Sobic002G222900 Sobic007G068000 Sobic007G068000 Sobic004G265700--Sobic007G068000 Sobic003G253000 Sobic003G253000 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic008G161800 Sobic008G161800 Sobic006G141500--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic006G141500--Sobic004G248800 Sobic002G046100 Sobic002G046100 Sobic006G141500--Sobic002G046100 Sobic010G163600--Sobic010G213400 Sobic010G163600--Sobic006G141500 Sobic010G163600--Sobic004G300900 Sobic010G163600--Sobic003G362400 Sobic004G284500 Sobic004G284500 Sobic010G163600--Sobic004G284500 Sobic001G445800 Sobic001G445800 Sobic010G163600--Sobic001G445800 Sobic010G163600--Sobic002G046100 Sobic003G249800 Sobic003G249800 Sobic010G163600--Sobic003G249800 Sobic010G163600--Sobic002G078400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic004G103700 Sobic004G103700 Sobic006G010600--Sobic004G103700 Sobic006G010600--Sobic001G445800 Sobic004G145801 Sobic004G145801 Sobic006G010600--Sobic004G145801 Sobic001G172000 Sobic001G172000 Sobic006G010600--Sobic001G172000 Sobic010G204600 Sobic010G204600 Sobic006G010600--Sobic010G204600 Sobic006G010600--Sobic003G368500 Sobic003G181500 Sobic003G181500 Sobic006G010600--Sobic003G181500 Sobic006G010600--Sobic002G078400 Sobic004G310300 Sobic004G310300 Sobic006G010600--Sobic004G310300 Sobic009G191600--Sobic001G066700 Sobic009G191600--Sobic003G362400 Sobic009G191600--Sobic006G062800 Sobic009G191600--Sobic001G041100 Sobic009G191600--Sobic003G358300 Sobic009G191600--Sobic010G213400 Sobic003G023500 Sobic003G023500 Sobic009G191600--Sobic003G023500 Sobic002G376500 Sobic002G376500 Sobic009G191600--Sobic002G376500 Sobic009G191600--Sobic001G224400 Sobic009G246950 Sobic009G246950 Sobic007G203700--Sobic009G246950 Sobic007G203700--Sobic001G529000 Sobic010G193800 Sobic010G193800 Sobic007G203700--Sobic010G193800 Sobic006G263900 Sobic006G263900 Sobic007G203700--Sobic006G263900 Sobic002G256300 Sobic002G256300 Sobic007G203700--Sobic002G256300 Sobic007G203700--Sobic004G300900 Sobic001G054200 Sobic001G054200 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500
Octagon: transcription factors


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