Gene annotation
Transcriptome id Sobic.010G163600.1
Synonym Sb10g021730, RABA1d, ATHSGBP, ATRAB11B, ATRABA1D
Functional annotation ras-related protein, putative, expressed
UniProt C5Z487
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF432
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G18800 : RAB GTPase homolog A1D
RAP-DB (Rice) LOC_Os06g35814.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a008978 , Zm00025a046500 , Zm00025a016417 , Zm00025a028122 , Zm00025a044575 , Zm00025a013755 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK12398 , KQK12397 , KQK09101 , KQK04867 , KQJ98137 , KQK08122 , KQK18040 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , KQK09739 , PNT64397 , KQK10572
Barley HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU7Hr1G063910.2 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G071740.6 , HORVU3Hr1G071740.4 , HORVU3Hr1G071740.5 , HORVU3Hr1G071740.2 , HORVU3Hr1G071740.3 , HORVU3Hr1G071740.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS7B02G273300 , TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS3A02G289600 , TraesCS1D02G405900 , TraesCS5D02G188900 , TraesCS7D02G368300 , TraesCS3D02G357500 , TraesCS3B02G324300 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS7B02G200600 , TraesCS5D02G529500 , TraesCS7A02G285200 , TraesCS1D02G013300 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS3D02G289400 , TraesCS7A02G354400 , TraesCS7D02G289000 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS5A02G485100 , TraesCS3D02G244500
Populus -


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cDNA sequences
Sobic.010G163600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
2 Sobic.006G141500 expressed protein -
3 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
4 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
5 Sobic.004G284500 ORM1, putative, expressed -
6 Sobic.001G445800 expressed protein -
7 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
8 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
9 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
10 Sobic.003G368500 Yip1 domain containing protein, expressed -
11 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
12 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
13 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
14 Sobic.002G282400 expressed protein -
15 Sobic.001G331900 expressed protein -
16 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
17 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14
18 Sobic.009G111600 expressed protein -
19 Sobic.007G059900 DUF292 domain containing protein, expressed -
20 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31


Gene co-expression network
sample Sobic010G163600 Sobic010G163600 Sobic010G213400 Sobic010G213400 Sobic010G163600--Sobic010G213400 Sobic006G141500 Sobic006G141500 Sobic010G163600--Sobic006G141500 Sobic004G300900 Sobic004G300900 Sobic010G163600--Sobic004G300900 Sobic003G362400 Sobic003G362400 Sobic010G163600--Sobic003G362400 Sobic004G284500 Sobic004G284500 Sobic010G163600--Sobic004G284500 Sobic001G445800 Sobic001G445800 Sobic010G163600--Sobic001G445800 Sobic002G046100 Sobic002G046100 Sobic010G163600--Sobic002G046100 Sobic003G249800 Sobic003G249800 Sobic010G163600--Sobic003G249800 Sobic002G078400 Sobic002G078400 Sobic010G163600--Sobic002G078400 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic010G213400--Sobic003G249800 Sobic009G033700 Sobic009G033700 Sobic010G213400--Sobic009G033700 Sobic010G213400--Sobic004G284500 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic010G213400--Sobic006G062800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic003G253000 Sobic003G253000 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic008G161800 Sobic008G161800 Sobic006G141500--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100 Sobic004G300900--Sobic002G078400 Sobic004G300900--Sobic006G141500 Sobic009G198500 Sobic009G198500 Sobic004G300900--Sobic009G198500 Sobic001G331900 Sobic001G331900 Sobic004G300900--Sobic001G331900 Sobic001G005900 Sobic001G005900 Sobic004G300900--Sobic001G005900 Sobic004G225500 Sobic004G225500 Sobic004G300900--Sobic004G225500 Sobic008G058300 Sobic008G058300 Sobic004G300900--Sobic008G058300 Sobic003G115800 Sobic003G115800 Sobic004G300900--Sobic003G115800 Sobic004G300900--Sobic001G445800 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic005G111100 Sobic005G111100 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic002G153500 Sobic002G153500 Sobic004G284500--Sobic002G153500 Sobic004G272800 Sobic004G272800 Sobic004G284500--Sobic004G272800 Sobic004G284500--Sobic003G368500 Sobic004G284500--Sobic009G033700 Sobic004G284500--Sobic001G445800 Sobic001G281400 Sobic001G281400 Sobic004G284500--Sobic001G281400 Sobic008G129400 Sobic008G129400 Sobic001G445800--Sobic008G129400 Sobic003G321700 Sobic003G321700 Sobic001G445800--Sobic003G321700 Sobic001G445800--Sobic002G078400 Sobic001G445800--Sobic003G249800 Sobic001G445800--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic001G445800--Sobic010G018400 Sobic010G154700 Sobic010G154700 Sobic001G445800--Sobic010G154700 Sobic001G019900 Sobic001G019900 Sobic001G445800--Sobic001G019900 Sobic002G190900 Sobic002G190900 Sobic001G445800--Sobic002G190900 Sobic003G285800 Sobic003G285800 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400
Octagon: transcription factors


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