Gene annotation
Transcriptome id Sobic.004G352200.1
Synonym Sb04g037890
Functional annotation expressed protein
UniProt C5XWL5
Pfam -
Panther DB PTHR36745 PTHR36745:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45860 : -
RAP-DB (Rice) LOC_Os02g57830.2 : expressed protein
MaizeGDB (Corn) Zm00025a032739
Brachypodium KQK01455
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
2 Sobic.003G044400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
3 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
4 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
5 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
6 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
7 Sobic.004G069500 expressed protein -
8 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
9 Sobic.001G331900 expressed protein -
10 Sobic.002G084500 expressed protein -
11 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
12 Sobic.010G210000 ubiquitin family protein, putative, expressed K12158: ubiquitin-like protein Nedd8
13 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
14 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
15 Sobic.009G258600 LSM domain containing protein, expressed K12627: U6 snRNA-associated Sm-like protein LSm8
16 Sobic.004G062400 LSM domain containing protein, expressed K11098: SNRPF, small nuclear ribonucleoprotein F
17 Sobic.009G227400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
18 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
19 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
20 Sobic.006G147000 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e


Gene co-expression network
sample Sobic004G352200 Sobic004G352200 Sobic003G160900 Sobic003G160900 Sobic004G352200--Sobic003G160900 Sobic003G044400 Sobic003G044400 Sobic004G352200--Sobic003G044400 Sobic001G117400 Sobic001G117400 Sobic004G352200--Sobic001G117400 Sobic002G371100 Sobic002G371100 Sobic004G352200--Sobic002G371100 Sobic003G063300 Sobic003G063300 Sobic004G352200--Sobic003G063300 Sobic001G018800 Sobic001G018800 Sobic004G352200--Sobic001G018800 Sobic004G069500 Sobic004G069500 Sobic004G352200--Sobic004G069500 Sobic003G127700 Sobic003G127700 Sobic004G352200--Sobic003G127700 Sobic001G331900 Sobic001G331900 Sobic004G352200--Sobic001G331900 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G287300 Sobic003G287300 Sobic003G160900--Sobic003G287300 Sobic001G481700 Sobic001G481700 Sobic003G160900--Sobic001G481700 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic009G163800 Sobic009G163800 Sobic003G044400--Sobic009G163800 Sobic005G110800 Sobic005G110800 Sobic003G044400--Sobic005G110800 Sobic009G105700 Sobic009G105700 Sobic003G044400--Sobic009G105700 Sobic009G166500 Sobic009G166500 Sobic003G044400--Sobic009G166500 Sobic001G172000 Sobic001G172000 Sobic003G044400--Sobic001G172000 Sobic001G377800 Sobic001G377800 Sobic003G044400--Sobic001G377800 Sobic003G346600 Sobic003G346600 Sobic003G044400--Sobic003G346600 Sobic001G074300 Sobic001G074300 Sobic003G044400--Sobic001G074300 Sobic010G060500 Sobic010G060500 Sobic003G044400--Sobic010G060500 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic001G117400--Sobic002G371100 Sobic005G191600 Sobic005G191600 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic001G117400--Sobic004G002350 Sobic001G117400--Sobic001G018800 Sobic001G404100 Sobic001G404100 Sobic001G117400--Sobic001G404100 Sobic001G117400--Sobic001G481700 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic001G025600 Sobic001G025600 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic004G103700 Sobic004G103700 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic003G063300--Sobic001G074300 Sobic004G216800 Sobic004G216800 Sobic003G063300--Sobic004G216800 Sobic007G100425 Sobic007G100425 Sobic003G063300--Sobic007G100425 Sobic002G364500 Sobic002G364500 Sobic003G063300--Sobic002G364500 Sobic001G005900 Sobic001G005900 Sobic003G063300--Sobic001G005900 Sobic002G364100 Sobic002G364100 Sobic003G063300--Sobic002G364100 Sobic004G225500 Sobic004G225500 Sobic003G063300--Sobic004G225500 Sobic003G063300--Sobic001G018800 Sobic003G063300--Sobic002G371100 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic001G018800--Sobic009G166500 Sobic001G011200 Sobic001G011200 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic004G069500--Sobic003G424800 Sobic004G130200 Sobic004G130200 Sobic004G069500--Sobic004G130200 Sobic002G392800 Sobic002G392800 Sobic004G069500--Sobic002G392800 Sobic004G310900 Sobic004G310900 Sobic004G069500--Sobic004G310900 Sobic004G069500--Sobic004G352200 Sobic004G069500--Sobic003G160900 Sobic003G130600 Sobic003G130600 Sobic004G069500--Sobic003G130600 Sobic004G069500--Sobic001G117400 Sobic004G069500--Sobic009G211700 Sobic002G378401 Sobic002G378401 Sobic003G127700--Sobic002G378401 Sobic002G116200 Sobic002G116200 Sobic003G127700--Sobic002G116200 Sobic003G367900 Sobic003G367900 Sobic003G127700--Sobic003G367900 Sobic010G210000 Sobic010G210000 Sobic003G127700--Sobic010G210000 Sobic007G068000 Sobic007G068000 Sobic003G127700--Sobic007G068000 Sobic009G258600 Sobic009G258600 Sobic003G127700--Sobic009G258600 Sobic010G008100 Sobic010G008100 Sobic003G127700--Sobic010G008100 Sobic002G280200 Sobic002G280200 Sobic003G127700--Sobic002G280200 Sobic009G050200 Sobic009G050200 Sobic003G127700--Sobic009G050200 Sobic004G107600 Sobic004G107600 Sobic001G331900--Sobic004G107600 Sobic005G157200 Sobic005G157200 Sobic001G331900--Sobic005G157200 Sobic008G058300 Sobic008G058300 Sobic001G331900--Sobic008G058300 Sobic002G078400 Sobic002G078400 Sobic001G331900--Sobic002G078400 Sobic008G132800 Sobic008G132800 Sobic001G331900--Sobic008G132800 Sobic004G300900 Sobic004G300900 Sobic001G331900--Sobic004G300900 Sobic001G331900--Sobic001G377800 Sobic003G362400 Sobic003G362400 Sobic001G331900--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic001G331900--Sobic001G529000
Octagon: transcription factors


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