Gene annotation
Transcriptome id Sobic.003G044400.1
Synonym RUXF, Sb03g003900
Functional annotation LSM domain containing protein, expressed
UniProt C5XMR4
Pfam PF01423
Panther DB PTHR11021
NCBI CDD KOG3482; Small nuclear ribonucleoprotein (snRNP) SMF
KEGG Orthology K11098; SNRPF, small nuclear ribonucleoprotein F
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30220 : small nuclear ribonucleoprotein F
RAP-DB (Rice) LOC_Os11g43620.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034754
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G044400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
2 Sobic.005G110800 - -
3 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
4 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
5 Sobic.001G172000 expressed protein -
6 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
8 Sobic.001G074300 40S ribosomal protein S29, putative, expressed K02980: RP-S29e, small subunit ribosomal protein S29e
9 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
10 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
11 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
12 Sobic.004G104100 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
13 Sobic.002G255300 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
14 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
15 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
16 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
17 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
18 Sobic.006G260400 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
19 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
20 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae


Gene co-expression network
sample Sobic003G044400 Sobic003G044400 Sobic009G163800 Sobic009G163800 Sobic003G044400--Sobic009G163800 Sobic005G110800 Sobic005G110800 Sobic003G044400--Sobic005G110800 Sobic009G105700 Sobic009G105700 Sobic003G044400--Sobic009G105700 Sobic009G166500 Sobic009G166500 Sobic003G044400--Sobic009G166500 Sobic001G172000 Sobic001G172000 Sobic003G044400--Sobic001G172000 Sobic001G377800 Sobic001G377800 Sobic003G044400--Sobic001G377800 Sobic003G346600 Sobic003G346600 Sobic003G044400--Sobic003G346600 Sobic001G074300 Sobic001G074300 Sobic003G044400--Sobic001G074300 Sobic010G060500 Sobic010G060500 Sobic003G044400--Sobic010G060500 Sobic009G163800--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic006G047400 Sobic006G047400 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic002G081600 Sobic002G081600 Sobic009G163800--Sobic002G081600 Sobic001G091801 Sobic001G091801 Sobic009G163800--Sobic001G091801 Sobic005G110800--Sobic009G166500 Sobic002G286900 Sobic002G286900 Sobic005G110800--Sobic002G286900 Sobic001G493001 Sobic001G493001 Sobic005G110800--Sobic001G493001 Sobic005G110800--Sobic002G081600 Sobic005G110800--Sobic009G050300 Sobic004G008400 Sobic004G008400 Sobic005G110800--Sobic004G008400 Sobic005G110800--Sobic009G163800 Sobic005G110800--Sobic003G346600 Sobic001G130301 Sobic001G130301 Sobic005G110800--Sobic001G130301 Sobic009G105700--Sobic004G331400 Sobic001G376600 Sobic001G376600 Sobic009G105700--Sobic001G376600 Sobic002G175100 Sobic002G175100 Sobic009G105700--Sobic002G175100 Sobic009G105700--Sobic006G047400 Sobic003G322400 Sobic003G322400 Sobic009G105700--Sobic003G322400 Sobic009G105700--Sobic003G346600 Sobic009G105700--Sobic001G493001 Sobic009G105600 Sobic009G105600 Sobic009G105700--Sobic009G105600 Sobic010G063801 Sobic010G063801 Sobic009G105700--Sobic010G063801 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic001G403500 Sobic001G403500 Sobic009G166500--Sobic001G403500 Sobic009G166500--Sobic010G060500 Sobic001G014500 Sobic001G014500 Sobic001G172000--Sobic001G014500 Sobic001G172000--Sobic005G110800 Sobic009G119900 Sobic009G119900 Sobic001G172000--Sobic009G119900 Sobic001G025600 Sobic001G025600 Sobic001G172000--Sobic001G025600 Sobic001G172000--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic001G172000--Sobic006G081100 Sobic004G103700 Sobic004G103700 Sobic001G172000--Sobic004G103700 Sobic007G019400 Sobic007G019400 Sobic001G172000--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic001G172000--Sobic003G249700 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic001G377800--Sobic009G050300 Sobic003G346600--Sobic010G060500 Sobic003G346600--Sobic009G050300 Sobic003G346600--Sobic002G081600 Sobic003G346600--Sobic009G166500 Sobic003G346600--Sobic004G008400 Sobic003G346600--Sobic009G163800 Sobic007G178600 Sobic007G178600 Sobic003G346600--Sobic007G178600 Sobic006G116700 Sobic006G116700 Sobic003G346600--Sobic006G116700 Sobic006G137100 Sobic006G137100 Sobic003G346600--Sobic006G137100 Sobic001G074300--Sobic006G047400 Sobic001G074300--Sobic001G374700 Sobic001G074300--Sobic009G163800 Sobic006G106100 Sobic006G106100 Sobic001G074300--Sobic006G106100 Sobic001G074300--Sobic001G091801 Sobic001G074300--Sobic002G175100 Sobic007G212600 Sobic007G212600 Sobic001G074300--Sobic007G212600 Sobic001G074300--Sobic009G166500 Sobic001G340500 Sobic001G340500 Sobic001G074300--Sobic001G340500 Sobic010G060500--Sobic003G346600 Sobic010G060500--Sobic006G137100 Sobic010G060500--Sobic004G008400 Sobic010G060500--Sobic009G166500 Sobic010G060500--Sobic009G050300 Sobic010G060500--Sobic007G178600 Sobic002G255300 Sobic002G255300 Sobic010G060500--Sobic002G255300 Sobic006G213000 Sobic006G213000 Sobic010G060500--Sobic006G213000 Sobic010G060500--Sobic009G163800
Octagon: transcription factors


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