Gene annotation
Transcriptome id Sobic.010G063801.1
Synonym -
Functional annotation -
UniProt A0A1W0VRQ7
Pfam PF00832
Panther DB PTHR19970
NCBI CDD KOG0002; 60s ribosomal protein L39
KEGG Orthology K02924; RP-L39e, large subunit ribosomal protein L39e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G31985 : Ribosomal protein L39 family protein
RAP-DB (Rice) LOC_Os02g55370.1 : 60S ribosomal protein L39, putative, expressed
MaizeGDB (Corn) Zm00025a049796 , Zm00025a032924
Brachypodium KQK19296 , PNT67017 , KQJ95898
Barley HORVU7Hr1G029860.2 , HORVU7Hr1G029860.3 , HORVU7Hr1G029860.1 , HORVU0Hr1G017360.3 , HORVU0Hr1G017360.2 , HORVU0Hr1G017360.1
Wheat TraesCS6D02G343900 , TraesCS6B02G393300 , TraesCS6A02G360400 , TraesCS7A02G145700 , TraesCS7D02G147000
Populus PNS92217 , PNT33858


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
2 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
3 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
4 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
5 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
6 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
7 Sobic.009G105700 60S ribosomal protein L29-2, putative, expressed K02905: RP-L29e, large subunit ribosomal protein L29e
8 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
9 Sobic.001G374700 40S ribosomal protein S21, putative, expressed K02971: RP-S21e, small subunit ribosomal protein S21e
10 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
11 Sobic.001G054900 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
12 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
13 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
14 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
15 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
16 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
17 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
18 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
19 Sobic.003G322400 40S ribosomal protein S25, putative, expressed K02975: RP-S25e, small subunit ribosomal protein S25e
20 Sobic.003G346600 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e


Gene co-expression network
sample Sobic010G063801 Sobic010G063801 Sobic002G081600 Sobic002G081600 Sobic010G063801--Sobic002G081600 Sobic002G200600 Sobic002G200600 Sobic010G063801--Sobic002G200600 Sobic006G116700 Sobic006G116700 Sobic010G063801--Sobic006G116700 Sobic010G251600 Sobic010G251600 Sobic010G063801--Sobic010G251600 Sobic001G130301 Sobic001G130301 Sobic010G063801--Sobic001G130301 Sobic003G436700 Sobic003G436700 Sobic010G063801--Sobic003G436700 Sobic009G105700 Sobic009G105700 Sobic010G063801--Sobic009G105700 Sobic009G215200 Sobic009G215200 Sobic010G063801--Sobic009G215200 Sobic001G374700 Sobic001G374700 Sobic010G063801--Sobic001G374700 Sobic009G050300 Sobic009G050300 Sobic002G081600--Sobic009G050300 Sobic002G081600--Sobic006G116700 Sobic003G346600 Sobic003G346600 Sobic002G081600--Sobic003G346600 Sobic002G081600--Sobic009G215200 Sobic002G081600--Sobic001G374700 Sobic002G081600--Sobic002G200600 Sobic006G067800 Sobic006G067800 Sobic002G081600--Sobic006G067800 Sobic009G166500 Sobic009G166500 Sobic002G081600--Sobic009G166500 Sobic001G403500 Sobic001G403500 Sobic002G081600--Sobic001G403500 Sobic007G184600 Sobic007G184600 Sobic002G200600--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic002G200600--Sobic001G402050 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G200600--Sobic002G081600 Sobic007G197800 Sobic007G197800 Sobic002G200600--Sobic007G197800 Sobic002G200600--Sobic001G374700 Sobic001G018900 Sobic001G018900 Sobic002G200600--Sobic001G018900 Sobic002G200600--Sobic001G130301 Sobic006G116700--Sobic009G050300 Sobic006G116700--Sobic007G197800 Sobic006G116700--Sobic009G215200 Sobic006G116700--Sobic001G018900 Sobic006G116700--Sobic002G081600 Sobic004G008400 Sobic004G008400 Sobic006G116700--Sobic004G008400 Sobic006G116700--Sobic001G130301 Sobic006G116700--Sobic002G200600 Sobic001G036900 Sobic001G036900 Sobic006G116700--Sobic001G036900 Sobic010G206200 Sobic010G206200 Sobic010G251600--Sobic010G206200 Sobic007G019400 Sobic007G019400 Sobic010G251600--Sobic007G019400 Sobic010G251600--Sobic003G436700 Sobic007G178600 Sobic007G178600 Sobic010G251600--Sobic007G178600 Sobic010G251600--Sobic009G215200 Sobic010G251600--Sobic006G116700 Sobic003G078200 Sobic003G078200 Sobic010G251600--Sobic003G078200 Sobic001G054900 Sobic001G054900 Sobic010G251600--Sobic001G054900 Sobic004G331400 Sobic004G331400 Sobic010G251600--Sobic004G331400 Sobic001G130301--Sobic009G215200 Sobic001G130301--Sobic007G197800 Sobic001G130301--Sobic006G116700 Sobic001G130301--Sobic001G018900 Sobic001G493001 Sobic001G493001 Sobic001G130301--Sobic001G493001 Sobic001G130301--Sobic001G402050 Sobic001G130301--Sobic009G050300 Sobic001G130301--Sobic002G200600 Sobic001G130301--Sobic001G374700 Sobic003G436700--Sobic004G008400 Sobic003G436700--Sobic006G116700 Sobic003G436700--Sobic009G050300 Sobic003G436700--Sobic010G251600 Sobic003G436700--Sobic006G067800 Sobic003G436700--Sobic007G178600 Sobic003G436700--Sobic002G081600 Sobic003G436700--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic003G436700--Sobic002G379500 Sobic009G105700--Sobic004G331400 Sobic001G376600 Sobic001G376600 Sobic009G105700--Sobic001G376600 Sobic002G175100 Sobic002G175100 Sobic009G105700--Sobic002G175100 Sobic006G047400 Sobic006G047400 Sobic009G105700--Sobic006G047400 Sobic003G322400 Sobic003G322400 Sobic009G105700--Sobic003G322400 Sobic009G105700--Sobic003G346600 Sobic009G105700--Sobic001G493001 Sobic009G105600 Sobic009G105600 Sobic009G105700--Sobic009G105600 Sobic009G105700--Sobic010G063801 Sobic009G215200--Sobic006G116700 Sobic009G215200--Sobic009G050300 Sobic009G215200--Sobic001G130301 Sobic009G215200--Sobic002G081600 Sobic009G215200--Sobic001G018900 Sobic009G215200--Sobic007G197800 Sobic009G215200--Sobic001G403500 Sobic001G016400 Sobic001G016400 Sobic009G215200--Sobic001G016400 Sobic009G215200--Sobic001G374700 Sobic001G374700--Sobic002G175100 Sobic001G374700--Sobic007G184600 Sobic001G374700--Sobic001G402050 Sobic001G374700--Sobic002G081600 Sobic001G374700--Sobic006G047400 Sobic001G374700--Sobic009G215200 Sobic001G374700--Sobic002G200600 Sobic001G374700--Sobic006G116700 Sobic001G374700--Sobic001G493001
Octagon: transcription factors


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