Gene annotation
Transcriptome id Sobic.002G406600.1
Synonym Sb02g042060
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X4T5
Pfam PF00076
Panther DB PTHR12311
NCBI CDD KOG3152; TBP-binding protein, activator of basal transcription (contains rrm motif)
KEGG Orthology K14785; ESF2, ESF2/ABP1 family protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G56510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g46760.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015377
Brachypodium KQK14803 , PNT74603
Barley HORVU2Hr1G021960.1 , HORVU1Hr1G083970.2 , HORVU1Hr1G083970.3 , HORVU1Hr1G083970.1
Wheat TraesCS1B02G400900 , TraesCS1A02G379200 , TraesCS1D02G386400 , TraesCS2B02G147200 , TraesCS2D02G127600 , TraesCS2A02G124700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
2 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
3 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
4 Sobic.002G086200 - -
5 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
6 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
7 Sobic.003G397700 sas10/Utp3 family protein, expressed K14765: NGDN, U3 small nucleolar ribonucleoprotein protein LCP5
8 Sobic.010G051500 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
9 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
10 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
11 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
12 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
13 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
14 Sobic.003G338100 methionyl-tRNA synthetase, putative, expressed K15437: AIMP1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.004G018800 HVA22, putative, expressed -
17 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
18 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
19 Sobic.006G242300 - -
20 Sobic.002G430800 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e


Gene co-expression network
sample Sobic002G406600 Sobic002G406600 Sobic009G138700 Sobic009G138700 Sobic002G406600--Sobic009G138700 Sobic004G130200 Sobic004G130200 Sobic002G406600--Sobic004G130200 Sobic001G147100 Sobic001G147100 Sobic002G406600--Sobic001G147100 Sobic002G086200 Sobic002G086200 Sobic002G406600--Sobic002G086200 Sobic003G424800 Sobic003G424800 Sobic002G406600--Sobic003G424800 Sobic010G247400 Sobic010G247400 Sobic002G406600--Sobic010G247400 Sobic003G397700 Sobic003G397700 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic007G039400 Sobic007G039400 Sobic002G406600--Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic004G130200--Sobic002G406600 Sobic004G130200--Sobic003G424800 Sobic001G404100 Sobic001G404100 Sobic004G130200--Sobic001G404100 Sobic004G069500 Sobic004G069500 Sobic004G130200--Sobic004G069500 Sobic004G248900 Sobic004G248900 Sobic004G130200--Sobic004G248900 Sobic001G117400 Sobic001G117400 Sobic004G130200--Sobic001G117400 Sobic002G341800 Sobic002G341800 Sobic004G130200--Sobic002G341800 Sobic009G190300 Sobic009G190300 Sobic004G130200--Sobic009G190300 Sobic004G130200--Sobic001G147100 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic002G086200--Sobic003G397700 Sobic002G086200--Sobic010G247400 Sobic002G086200--Sobic007G039400 Sobic002G086200--Sobic002G406600 Sobic002G086200--Sobic009G138700 Sobic002G086200--Sobic008G160000 Sobic002G086200--Sobic009G143800 Sobic003G407600 Sobic003G407600 Sobic002G086200--Sobic003G407600 Sobic006G269900 Sobic006G269900 Sobic002G086200--Sobic006G269900 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic003G397700--Sobic002G086200 Sobic003G397700--Sobic009G138700 Sobic009G235000 Sobic009G235000 Sobic003G397700--Sobic009G235000 Sobic003G397700--Sobic008G160000 Sobic003G397700--Sobic002G406600 Sobic003G397700--Sobic006G135900 Sobic001G007900 Sobic001G007900 Sobic003G397700--Sobic001G007900 Sobic003G397700--Sobic010G247400 Sobic008G018800 Sobic008G018800 Sobic003G397700--Sobic008G018800 Sobic004G018800 Sobic004G018800 Sobic010G051500--Sobic004G018800 Sobic001G532100 Sobic001G532100 Sobic010G051500--Sobic001G532100 Sobic001G285300 Sobic001G285300 Sobic010G051500--Sobic001G285300 Sobic007G203700 Sobic007G203700 Sobic010G051500--Sobic007G203700 Sobic003G316850 Sobic003G316850 Sobic010G051500--Sobic003G316850 Sobic006G143500 Sobic006G143500 Sobic010G051500--Sobic006G143500 Sobic010G051500--Sobic003G424800 Sobic004G019600 Sobic004G019600 Sobic010G051500--Sobic004G019600 Sobic010G193800 Sobic010G193800 Sobic010G051500--Sobic010G193800 Sobic001G291800 Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic007G039400--Sobic009G138700 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600
Octagon: transcription factors


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