Gene annotation
Transcriptome id Sobic.002G086200.4,Sobic.002G086200.3
Synonym
Functional annotation -
UniProt A0A1W0W305 , A0A1W0W321
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G086200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G397700 sas10/Utp3 family protein, expressed K14765: NGDN, U3 small nucleolar ribonucleoprotein protein LCP5
2 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
3 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
4 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
5 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
6 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
8 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
9 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
10 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
11 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
12 Sobic.007G102700 - -
13 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
14 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
15 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
16 Sobic.001G007900 BCCIP, putative, expressed K15262: BCP1, protein BCP1
17 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
18 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
19 Sobic.009G238850 - -
20 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17


Gene co-expression network
sample Sobic002G086200 Sobic002G086200 Sobic003G397700 Sobic003G397700 Sobic002G086200--Sobic003G397700 Sobic010G247400 Sobic010G247400 Sobic002G086200--Sobic010G247400 Sobic007G039400 Sobic007G039400 Sobic002G086200--Sobic007G039400 Sobic002G406600 Sobic002G406600 Sobic002G086200--Sobic002G406600 Sobic009G138700 Sobic009G138700 Sobic002G086200--Sobic009G138700 Sobic008G160000 Sobic008G160000 Sobic002G086200--Sobic008G160000 Sobic009G143800 Sobic009G143800 Sobic002G086200--Sobic009G143800 Sobic003G407600 Sobic003G407600 Sobic002G086200--Sobic003G407600 Sobic006G269900 Sobic006G269900 Sobic002G086200--Sobic006G269900 Sobic003G397700--Sobic002G086200 Sobic003G397700--Sobic009G138700 Sobic009G235000 Sobic009G235000 Sobic003G397700--Sobic009G235000 Sobic003G397700--Sobic008G160000 Sobic003G397700--Sobic002G406600 Sobic006G135900 Sobic006G135900 Sobic003G397700--Sobic006G135900 Sobic001G007900 Sobic001G007900 Sobic003G397700--Sobic001G007900 Sobic003G397700--Sobic010G247400 Sobic008G018800 Sobic008G018800 Sobic003G397700--Sobic008G018800 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G291800 Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic007G039400--Sobic009G138700 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic002G406600--Sobic009G138700 Sobic004G130200 Sobic004G130200 Sobic002G406600--Sobic004G130200 Sobic001G147100 Sobic001G147100 Sobic002G406600--Sobic001G147100 Sobic002G406600--Sobic002G086200 Sobic003G424800 Sobic003G424800 Sobic002G406600--Sobic003G424800 Sobic002G406600--Sobic010G247400 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic002G406600--Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic009G138700--Sobic008G160000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G138700--Sobic009G143800 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic009G143800--Sobic001G291800 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic006G269900--Sobic006G084000 Sobic006G269900--Sobic008G160000 Sobic004G256000 Sobic004G256000 Sobic006G269900--Sobic004G256000 Sobic006G010400 Sobic006G010400 Sobic006G269900--Sobic006G010400 Sobic009G249800 Sobic009G249800 Sobic006G269900--Sobic009G249800 Sobic006G269900--Sobic003G407600 Sobic004G252000 Sobic004G252000 Sobic006G269900--Sobic004G252000 Sobic006G269900--Sobic010G247400 Sobic009G045900 Sobic009G045900 Sobic006G269900--Sobic009G045900
Octagon: transcription factors


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