Gene annotation
Transcriptome id Sobic.003G397700.1
Synonym Sb03g043440
Functional annotation sas10/Utp3 family protein, expressed
UniProt C5XFL2
Pfam PF04000
Panther DB PTHR13237
NCBI CDD KOG3117; Protein involved in rRNA processing
KEGG Orthology K14765; NGDN, U3 small nucleolar ribonucleoprotein protein LCP5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07840 : Sas10/Utp3/C1D family
RAP-DB (Rice) LOC_Os01g68310.1 : sas10/Utp3 family protein, expressed
MaizeGDB (Corn) Zm00025a039391 , Zm00025a051626 , Zm00025a002983
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G086200 - -
2 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
3 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
4 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
6 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
7 Sobic.001G007900 BCCIP, putative, expressed K15262: BCP1, protein BCP1
8 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
9 Sobic.008G018800 EMB1379, putative, expressed -
10 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
11 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
12 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
13 Sobic.010G017900 NUC153 domain containing protein, expressed K14788: NOL10, ribosome biogenesis protein ENP2
14 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
15 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
16 Sobic.005G001400 signal recognition particle receptor subunit beta, putative, expressed K12272: SRPRB, signal recognition particle receptor subunit beta
17 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
18 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
19 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
20 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B


Gene co-expression network
sample Sobic003G397700 Sobic003G397700 Sobic002G086200 Sobic002G086200 Sobic003G397700--Sobic002G086200 Sobic009G138700 Sobic009G138700 Sobic003G397700--Sobic009G138700 Sobic009G235000 Sobic009G235000 Sobic003G397700--Sobic009G235000 Sobic008G160000 Sobic008G160000 Sobic003G397700--Sobic008G160000 Sobic002G406600 Sobic002G406600 Sobic003G397700--Sobic002G406600 Sobic006G135900 Sobic006G135900 Sobic003G397700--Sobic006G135900 Sobic001G007900 Sobic001G007900 Sobic003G397700--Sobic001G007900 Sobic010G247400 Sobic010G247400 Sobic003G397700--Sobic010G247400 Sobic008G018800 Sobic008G018800 Sobic003G397700--Sobic008G018800 Sobic002G086200--Sobic003G397700 Sobic002G086200--Sobic010G247400 Sobic007G039400 Sobic007G039400 Sobic002G086200--Sobic007G039400 Sobic002G086200--Sobic002G406600 Sobic002G086200--Sobic009G138700 Sobic002G086200--Sobic008G160000 Sobic009G143800 Sobic009G143800 Sobic002G086200--Sobic009G143800 Sobic003G407600 Sobic003G407600 Sobic002G086200--Sobic003G407600 Sobic006G269900 Sobic006G269900 Sobic002G086200--Sobic006G269900 Sobic009G138700--Sobic007G039400 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic009G138700--Sobic006G135900 Sobic009G138700--Sobic009G143800 Sobic004G252000 Sobic004G252000 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic009G235000--Sobic006G135900 Sobic009G235000--Sobic008G160000 Sobic009G249800 Sobic009G249800 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic001G017700 Sobic001G017700 Sobic009G235000--Sobic001G017700 Sobic002G423500 Sobic002G423500 Sobic009G235000--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic009G235000--Sobic001G251600 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic002G406600--Sobic009G138700 Sobic004G130200 Sobic004G130200 Sobic002G406600--Sobic004G130200 Sobic001G147100 Sobic001G147100 Sobic002G406600--Sobic001G147100 Sobic002G406600--Sobic002G086200 Sobic003G424800 Sobic003G424800 Sobic002G406600--Sobic003G424800 Sobic002G406600--Sobic010G247400 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic002G406600--Sobic007G039400 Sobic006G135900--Sobic008G160000 Sobic006G135900--Sobic001G455800 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic001G007900--Sobic010G247400 Sobic002G341800 Sobic002G341800 Sobic001G007900--Sobic002G341800 Sobic006G280600 Sobic006G280600 Sobic001G007900--Sobic006G280600 Sobic001G007900--Sobic001G259000 Sobic001G007900--Sobic009G235000 Sobic001G007900--Sobic001G017700 Sobic001G221500 Sobic001G221500 Sobic001G007900--Sobic001G221500 Sobic001G007900--Sobic009G249800 Sobic002G014400 Sobic002G014400 Sobic001G007900--Sobic002G014400 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic002G395700 Sobic002G395700 Sobic008G018800--Sobic002G395700 Sobic008G018800--Sobic001G007800 Sobic009G002000 Sobic009G002000 Sobic008G018800--Sobic009G002000 Sobic001G334100 Sobic001G334100 Sobic008G018800--Sobic001G334100 Sobic009G208200 Sobic009G208200 Sobic008G018800--Sobic009G208200 Sobic002G277200 Sobic002G277200 Sobic008G018800--Sobic002G277200 Sobic002G005000 Sobic002G005000 Sobic008G018800--Sobic002G005000 Sobic004G307500 Sobic004G307500 Sobic008G018800--Sobic004G307500 Sobic001G206500 Sobic001G206500 Sobic008G018800--Sobic001G206500
Octagon: transcription factors


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