Gene annotation
Transcriptome id Sobic.005G001400.3,Sobic.005G001400.2
Synonym Sb05g000300
Functional annotation signal recognition particle receptor subunit beta, putative, expressed
UniProt C5Y2M7 , A0A1B6PPD8
Pfam PF00025
Panther DB PTHR11485
NCBI CDD KOG0090; Signal recognition particle receptor, beta subunit (small G protein superfamily)
KEGG Orthology K12272; SRPRB, signal recognition particle receptor subunit beta
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G05670 : signal recognition particle binding
RAP-DB (Rice) LOC_Os08g41250.1 : signal recognition particle receptor subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a006030 , Zm00025a030986
Brachypodium KQK11611 , PNT68461
Barley HORVU7Hr1G039510.4 , HORVU7Hr1G052720.3 , HORVU7Hr1G052720.2 , HORVU7Hr1G052720.1 , HORVU7Hr1G052720.6 , HORVU7Hr1G052720.5 , HORVU7Hr1G052720.4 , HORVU7Hr1G039510.7 , HORVU7Hr1G039510.6 , HORVU7Hr1G039510.5 , HORVU7Hr1G039510.3 , HORVU7Hr1G039510.2 , HORVU7Hr1G039510.1 , HORVU7Hr1G039510.9 , HORVU7Hr1G039510.8
Wheat TraesCS7A02G255400 , TraesCS7A02G193200 , TraesCS7D02G194500 , TraesCS7D02G194500 , TraesCS7D02G253800 , TraesCS7B02G151700 , TraesCS7B02G098500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G050800 expressed protein -
2 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
3 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
4 Sobic.003G214300 expressed protein -
5 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
6 Sobic.002G192200 proteasome subunit, putative, expressed -
7 Sobic.010G203300 paxneb-related protein, putative, expressed K11375: elongator complex protein 4
8 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
9 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
10 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
11 Sobic.004G192900 expressed protein -
12 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
13 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
14 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
15 Sobic.001G067400 arv1, putative, expressed -
16 Sobic.010G128101 - -
17 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
18 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
19 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
20 Sobic.006G258900 expressed protein -


Gene co-expression network
sample Sobic005G001400 Sobic005G001400 Sobic008G050800 Sobic008G050800 Sobic005G001400--Sobic008G050800 Sobic009G138700 Sobic009G138700 Sobic005G001400--Sobic009G138700 Sobic010G027600 Sobic010G027600 Sobic005G001400--Sobic010G027600 Sobic003G214300 Sobic003G214300 Sobic005G001400--Sobic003G214300 Sobic001G524400 Sobic001G524400 Sobic005G001400--Sobic001G524400 Sobic002G192200 Sobic002G192200 Sobic005G001400--Sobic002G192200 Sobic010G203300 Sobic010G203300 Sobic005G001400--Sobic010G203300 Sobic009G036200 Sobic009G036200 Sobic005G001400--Sobic009G036200 Sobic010G264000 Sobic010G264000 Sobic005G001400--Sobic010G264000 Sobic001G466700 Sobic001G466700 Sobic008G050800--Sobic001G466700 Sobic009G228700 Sobic009G228700 Sobic008G050800--Sobic009G228700 Sobic001G091300 Sobic001G091300 Sobic008G050800--Sobic001G091300 Sobic006G017000 Sobic006G017000 Sobic008G050800--Sobic006G017000 Sobic001G360200 Sobic001G360200 Sobic008G050800--Sobic001G360200 Sobic003G289400 Sobic003G289400 Sobic008G050800--Sobic003G289400 Sobic010G209000 Sobic010G209000 Sobic008G050800--Sobic010G209000 Sobic004G066200 Sobic004G066200 Sobic008G050800--Sobic004G066200 Sobic006G249700 Sobic006G249700 Sobic008G050800--Sobic006G249700 Sobic007G039400 Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic010G018700 Sobic010G018700 Sobic010G027600--Sobic010G018700 Sobic010G027600--Sobic004G066200 Sobic009G222500 Sobic009G222500 Sobic010G027600--Sobic009G222500 Sobic002G352600 Sobic002G352600 Sobic010G027600--Sobic002G352600 Sobic009G179700 Sobic009G179700 Sobic010G027600--Sobic009G179700 Sobic002G110700 Sobic002G110700 Sobic010G027600--Sobic002G110700 Sobic010G027600--Sobic002G192200 Sobic010G027600--Sobic009G228700 Sobic006G049700 Sobic006G049700 Sobic010G027600--Sobic006G049700 Sobic006G142400 Sobic006G142400 Sobic003G214300--Sobic006G142400 Sobic008G098600 Sobic008G098600 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic010G247400 Sobic010G247400 Sobic003G214300--Sobic010G247400 Sobic001G061200 Sobic001G061200 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic004G307500 Sobic004G307500 Sobic001G524400--Sobic004G307500 Sobic001G524400--Sobic010G203300 Sobic001G524400--Sobic006G135900 Sobic001G524400--Sobic007G039400 Sobic003G300300 Sobic003G300300 Sobic001G524400--Sobic003G300300 Sobic008G103300 Sobic008G103300 Sobic001G524400--Sobic008G103300 Sobic003G188500 Sobic003G188500 Sobic001G524400--Sobic003G188500 Sobic001G524400--Sobic009G138700 Sobic004G346100 Sobic004G346100 Sobic001G524400--Sobic004G346100 Sobic006G101700 Sobic006G101700 Sobic002G192200--Sobic006G101700 Sobic002G192200--Sobic010G027600 Sobic002G192200--Sobic009G222500 Sobic002G192200--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic002G192200--Sobic007G166400 Sobic001G114500 Sobic001G114500 Sobic002G192200--Sobic001G114500 Sobic001G522600 Sobic001G522600 Sobic002G192200--Sobic001G522600 Sobic002G192200--Sobic006G049700 Sobic007G225100 Sobic007G225100 Sobic002G192200--Sobic007G225100 Sobic010G203300--Sobic001G524400 Sobic010G203300--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic010G203300--Sobic009G058500 Sobic010G203300--Sobic009G138700 Sobic010G203300--Sobic001G360200 Sobic010G203300--Sobic001G259000 Sobic001G512300 Sobic001G512300 Sobic010G203300--Sobic001G512300 Sobic010G203300--Sobic010G247400 Sobic009G194801 Sobic009G194801 Sobic010G203300--Sobic009G194801 Sobic007G111100 Sobic007G111100 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G258400 Sobic009G258400 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic002G262700 Sobic002G262700 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic009G036200--Sobic004G346100 Sobic001G042200 Sobic001G042200 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic006G270600 Sobic006G270600 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic010G264000--Sobic008G103300 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic003G363700 Sobic003G363700 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic001G492200 Sobic001G492200 Sobic010G264000--Sobic001G492200 Sobic010G264000--Sobic006G142400
Octagon: transcription factors


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