Gene annotation
Transcriptome id Sobic.008G050800.1
Synonym Sb08g004280
Functional annotation expressed protein
UniProt C5YSM4
Pfam -
Panther DB PTHR33065 PTHR33065:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g54759.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G050800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
2 Sobic.009G228700 expressed protein -
3 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
4 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
5 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
6 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
7 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
8 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
9 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
11 Sobic.002G034600 zinc ion binding protein, putative, expressed -
12 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
13 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
15 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
16 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
17 Sobic.003G102400 expressed protein -
18 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
19 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
20 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4


Gene co-expression network
sample Sobic008G050800 Sobic008G050800 Sobic001G466700 Sobic001G466700 Sobic008G050800--Sobic001G466700 Sobic009G228700 Sobic009G228700 Sobic008G050800--Sobic009G228700 Sobic001G091300 Sobic001G091300 Sobic008G050800--Sobic001G091300 Sobic006G017000 Sobic006G017000 Sobic008G050800--Sobic006G017000 Sobic001G360200 Sobic001G360200 Sobic008G050800--Sobic001G360200 Sobic003G289400 Sobic003G289400 Sobic008G050800--Sobic003G289400 Sobic010G209000 Sobic010G209000 Sobic008G050800--Sobic010G209000 Sobic004G066200 Sobic004G066200 Sobic008G050800--Sobic004G066200 Sobic006G249700 Sobic006G249700 Sobic008G050800--Sobic006G249700 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic001G356600 Sobic001G356600 Sobic009G228700--Sobic001G356600 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic001G091300--Sobic004G066200 Sobic001G085100 Sobic001G085100 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G261436 Sobic001G261436 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic002G303600 Sobic002G303600 Sobic001G091300--Sobic002G303600 Sobic006G017000--Sobic004G066200 Sobic006G017000--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic006G017000--Sobic006G101700 Sobic004G353200 Sobic004G353200 Sobic006G017000--Sobic004G353200 Sobic006G017000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic006G017000--Sobic001G392300 Sobic002G347000 Sobic002G347000 Sobic006G017000--Sobic002G347000 Sobic007G166400 Sobic007G166400 Sobic006G017000--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic006G017000--Sobic010G027600 Sobic006G278700 Sobic006G278700 Sobic001G360200--Sobic006G278700 Sobic001G360200--Sobic004G066200 Sobic007G184500 Sobic007G184500 Sobic001G360200--Sobic007G184500 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G360200--Sobic001G143500 Sobic009G058500 Sobic009G058500 Sobic001G360200--Sobic009G058500 Sobic001G360200--Sobic009G228700 Sobic001G360200--Sobic006G101700 Sobic006G173100 Sobic006G173100 Sobic003G289400--Sobic006G173100 Sobic003G289400--Sobic007G118200 Sobic001G091400 Sobic001G091400 Sobic003G289400--Sobic001G091400 Sobic010G245000 Sobic010G245000 Sobic003G289400--Sobic010G245000 Sobic001G090400 Sobic001G090400 Sobic003G289400--Sobic001G090400 Sobic003G289400--Sobic003G081000 Sobic006G195700 Sobic006G195700 Sobic003G289400--Sobic006G195700 Sobic008G014500 Sobic008G014500 Sobic003G289400--Sobic008G014500 Sobic001G408700 Sobic001G408700 Sobic003G289400--Sobic001G408700 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic010G209000--Sobic006G017000 Sobic010G209000--Sobic007G166400 Sobic010G209000--Sobic008G050800 Sobic010G209000--Sobic001G360200 Sobic010G209000--Sobic001G392300 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G066200--Sobic004G353200 Sobic004G066200--Sobic001G091300 Sobic006G249700--Sobic009G228700 Sobic006G249700--Sobic009G207000 Sobic004G348300 Sobic004G348300 Sobic006G249700--Sobic004G348300 Sobic006G249700--Sobic003G312200 Sobic002G352600 Sobic002G352600 Sobic006G249700--Sobic002G352600 Sobic006G249700--Sobic004G275700 Sobic006G249700--Sobic001G323000 Sobic006G249700--Sobic006G148200 Sobic009G138100 Sobic009G138100 Sobic006G249700--Sobic009G138100
Octagon: transcription factors


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