Gene annotation
Transcriptome id Sobic.003G289400.2,Sobic.003G289400.1
Synonym WIG, ATFTB, ERA1, Sb03g034000
Functional annotation farnesyltransferase subunit beta, putative, expressed
UniProt A0A1W0VZF4 , A0A1W0VZF0
Pfam PF00432
Panther DB PTHR11774 PTHR11774:SF6
NCBI CDD -
KEGG Orthology K05954; protein farnesyltransferase subunit beta
Gene Ontology GO:0003824; catalytic activity GO:0018343protein farnesylation GO:0005965protein farnesyltransferase complex


Orthologs (automatic annotation)
TAIR AT5G40280 : Prenyltransferase family protein
RAP-DB (Rice) LOC_Os01g53600.1 : farnesyltransferase subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a027677
Brachypodium PNT72799 , PNT72800
Barley HORVU3Hr1G070050.11 , HORVU3Hr1G070050.10 , HORVU3Hr1G070050.13 , HORVU3Hr1G070050.12 , HORVU3Hr1G070050.15 , HORVU3Hr1G070050.14 , HORVU3Hr1G070050.16 , HORVU3Hr1G070050.9 , HORVU3Hr1G070050.8 , HORVU3Hr1G070050.5 , HORVU3Hr1G070050.4 , HORVU3Hr1G070050.7 , HORVU3Hr1G070050.6 , HORVU3Hr1G070050.1 , HORVU3Hr1G070050.3 , HORVU3Hr1G070050.2
Wheat TraesCS3A02G278500 , TraesCS3D02G278800 , TraesCS3B02G312700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G289400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
2 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
3 Sobic.001G091400 expressed protein -
4 Sobic.010G245000 DTW domain containing protein, putative, expressed -
5 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
6 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
7 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
8 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
9 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
10 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
11 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
12 Sobic.002G034600 zinc ion binding protein, putative, expressed -
13 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
14 Sobic.007G000800 expressed protein -
15 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.004G241400 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
17 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
18 Sobic.009G210500 expressed protein -
19 Sobic.010G204400 phox domain-containing protein, putative, expressed -
20 Sobic.003G205501 - -


Gene co-expression network
sample Sobic003G289400 Sobic003G289400 Sobic006G173100 Sobic006G173100 Sobic003G289400--Sobic006G173100 Sobic007G118200 Sobic007G118200 Sobic003G289400--Sobic007G118200 Sobic001G091400 Sobic001G091400 Sobic003G289400--Sobic001G091400 Sobic010G245000 Sobic010G245000 Sobic003G289400--Sobic010G245000 Sobic001G090400 Sobic001G090400 Sobic003G289400--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic003G289400--Sobic003G081000 Sobic006G195700 Sobic006G195700 Sobic003G289400--Sobic006G195700 Sobic008G014500 Sobic008G014500 Sobic003G289400--Sobic008G014500 Sobic001G408700 Sobic001G408700 Sobic003G289400--Sobic001G408700 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic010G033400 Sobic010G033400 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic004G350100 Sobic004G350100 Sobic007G118200--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic007G118200--Sobic009G198100 Sobic008G174300 Sobic008G174300 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic007G118200--Sobic001G408700 Sobic002G071500 Sobic002G071500 Sobic001G091400--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic001G091400--Sobic001G026200 Sobic010G116600 Sobic010G116600 Sobic001G091400--Sobic010G116600 Sobic001G091400--Sobic008G014500 Sobic010G236400 Sobic010G236400 Sobic001G091400--Sobic010G236400 Sobic001G091400--Sobic003G289400 Sobic001G398800 Sobic001G398800 Sobic001G091400--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic001G091400--Sobic007G183900 Sobic001G452000 Sobic001G452000 Sobic001G091400--Sobic001G452000 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic010G245000--Sobic004G345700 Sobic004G084300 Sobic004G084300 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic002G264200 Sobic002G264200 Sobic010G245000--Sobic002G264200 Sobic008G173100 Sobic008G173100 Sobic010G245000--Sobic008G173100 Sobic003G241200 Sobic003G241200 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic006G195700--Sobic010G236400 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic006G195700--Sobic002G260400 Sobic006G195700--Sobic010G245000 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic004G007300 Sobic004G007300 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G056200 Sobic001G056200 Sobic001G408700--Sobic001G056200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic001G408700--Sobic002G197100 Sobic004G283000 Sobic004G283000 Sobic001G408700--Sobic004G283000 Sobic001G408700--Sobic010G245000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.