Gene annotation
Transcriptome id Sobic.006G258900.1
Synonym Sb06g032200
Functional annotation expressed protein
UniProt C5YA21
Pfam -
Panther DB PTHR36703 PTHR36703:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04985 : -
RAP-DB (Rice) LOC_Os04g57330.1 : expressed protein
MaizeGDB (Corn) Zm00025a025104 , Zm00025a057330
Brachypodium KQJ85195
Barley -
Wheat TraesCS2A02G541500 , TraesCS2A02G541500 , TraesCS2D02G542700 , TraesCS2B02G571800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G258900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115900 SAM domain family protein, expressed -
2 Sobic.004G007300 expressed protein -
3 Sobic.001G522900 expressed protein -
4 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
5 Sobic.007G205000 zinc finger family protein, putative, expressed -
6 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
7 Sobic.009G194801 - -
8 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
9 Sobic.001G056200 expressed protein -
10 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
11 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
12 Sobic.010G028300 bromodomain domain containing protein, expressed -
13 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
14 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
16 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
17 Sobic.002G306400 zinc finger family protein, putative, expressed -
18 Sobic.004G316800 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
19 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
20 Sobic.008G129100 expressed protein -


Gene co-expression network
sample Sobic006G258900 Sobic006G258900 Sobic007G115900 Sobic007G115900 Sobic006G258900--Sobic007G115900 Sobic004G007300 Sobic004G007300 Sobic006G258900--Sobic004G007300 Sobic001G522900 Sobic001G522900 Sobic006G258900--Sobic001G522900 Sobic004G350100 Sobic004G350100 Sobic006G258900--Sobic004G350100 Sobic007G205000 Sobic007G205000 Sobic006G258900--Sobic007G205000 Sobic001G043900 Sobic001G043900 Sobic006G258900--Sobic001G043900 Sobic009G194801 Sobic009G194801 Sobic006G258900--Sobic009G194801 Sobic001G390500 Sobic001G390500 Sobic006G258900--Sobic001G390500 Sobic001G056200 Sobic001G056200 Sobic006G258900--Sobic001G056200 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic007G115900--Sobic001G043900 Sobic009G032300 Sobic009G032300 Sobic007G115900--Sobic009G032300 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700 Sobic002G197100 Sobic002G197100 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G345700 Sobic004G345700 Sobic004G007300--Sobic004G345700 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G283000 Sobic004G283000 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic004G007300--Sobic001G056200 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic007G205000--Sobic004G350100 Sobic001G043900--Sobic007G115900 Sobic009G225200 Sobic009G225200 Sobic001G043900--Sobic009G225200 Sobic001G043900--Sobic006G258900 Sobic005G014950 Sobic005G014950 Sobic001G043900--Sobic005G014950 Sobic003G417900 Sobic003G417900 Sobic001G043900--Sobic003G417900 Sobic001G428400 Sobic001G428400 Sobic001G043900--Sobic001G428400 Sobic009G117300 Sobic009G117300 Sobic001G043900--Sobic009G117300 Sobic009G015800 Sobic009G015800 Sobic001G043900--Sobic009G015800 Sobic001G043900--Sobic002G197100 Sobic009G194801--Sobic006G258900 Sobic010G027600 Sobic010G027600 Sobic009G194801--Sobic010G027600 Sobic009G194801--Sobic007G115900 Sobic009G194801--Sobic001G043900 Sobic002G347000 Sobic002G347000 Sobic009G194801--Sobic002G347000 Sobic009G194801--Sobic003G417900 Sobic002G306400 Sobic002G306400 Sobic009G194801--Sobic002G306400 Sobic009G058500 Sobic009G058500 Sobic009G194801--Sobic009G058500 Sobic003G178900 Sobic003G178900 Sobic009G194801--Sobic003G178900 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic003G248500 Sobic003G248500 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic004G263900 Sobic004G263900 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic010G174800 Sobic010G174800 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic001G056200--Sobic004G263900 Sobic001G056200--Sobic001G408700 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic001G056200--Sobic004G007300 Sobic008G174300 Sobic008G174300 Sobic001G056200--Sobic008G174300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.