Gene annotation
Transcriptome id Sobic.004G192900.1
Synonym Sb04g024080
Functional annotation expressed protein
UniProt A0A1Z5RN81
Pfam -
Panther DB PTHR34778 PTHR34778:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19010 : -
RAP-DB (Rice) LOC_Os02g37020.1 : expressed protein
MaizeGDB (Corn) Zm00025a031758 , Zm00025a020836
Brachypodium PNT68918 , KQK00049 , KQK00048
Barley -
Wheat TraesCS6A02G198400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
2 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
3 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
4 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
5 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
6 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
7 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
8 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
9 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
10 Sobic.004G320100 expressed protein -
11 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
12 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
13 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
14 Sobic.002G361400 frigida, putative, expressed -
15 Sobic.004G041200 expressed protein -
16 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
17 Sobic.006G225300 expressed protein -
18 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
19 Sobic.003G201900 coiled-coil domain-containing protein, putative, expressed -
20 Sobic.006G049100 expressed protein -


Gene co-expression network
sample Sobic004G192900 Sobic004G192900 Sobic003G132000 Sobic003G132000 Sobic004G192900--Sobic003G132000 Sobic009G258400 Sobic009G258400 Sobic004G192900--Sobic009G258400 Sobic001G114500 Sobic001G114500 Sobic004G192900--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic004G192900--Sobic006G270600 Sobic003G121300 Sobic003G121300 Sobic004G192900--Sobic003G121300 Sobic010G264000 Sobic010G264000 Sobic004G192900--Sobic010G264000 Sobic010G209000 Sobic010G209000 Sobic004G192900--Sobic010G209000 Sobic004G353000 Sobic004G353000 Sobic004G192900--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic004G192900--Sobic001G259000 Sobic003G132000--Sobic001G114500 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic001G114500--Sobic003G132000 Sobic001G114500--Sobic003G121300 Sobic001G114500--Sobic008G103300 Sobic001G114500--Sobic009G164000 Sobic001G473600 Sobic001G473600 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic004G155600 Sobic004G155600 Sobic006G270600--Sobic004G155600 Sobic006G270600--Sobic003G132000 Sobic006G270600--Sobic001G259000 Sobic006G270600--Sobic010G264000 Sobic002G295500 Sobic002G295500 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic003G121300--Sobic005G160400 Sobic003G121300--Sobic003G132000 Sobic003G121300--Sobic001G487100 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic003G121300--Sobic009G164000 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic010G264000--Sobic008G103300 Sobic001G042200 Sobic001G042200 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic010G264000--Sobic001G492200 Sobic006G142400 Sobic006G142400 Sobic010G264000--Sobic006G142400 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic006G101700 Sobic006G101700 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic007G166400 Sobic007G166400 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic001G360200 Sobic001G360200 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic004G353000--Sobic001G473600 Sobic004G353000--Sobic001G291800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.