Gene annotation
Transcriptome id Sobic.002G361400.1
Synonym Sb02g038160
Functional annotation frigida, putative, expressed
UniProt C5XD59
Pfam PF07899
Panther DB PTHR31791 PTHR31791:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48385 : FRIGIDA-like protein
RAP-DB (Rice) LOC_Os07g40270.1 : frigida, putative, expressed
MaizeGDB (Corn) Zm00025a015081 , Zm00025a048625
Brachypodium KQK15445
Barley HORVU1Hr1G088810.1 , HORVU1Hr1G088810.2 , HORVU1Hr1G088810.3
Wheat TraesCS1D02G411200 , TraesCS1D02G411200 , TraesCS1A02G403200 , TraesCS1A02G403200 , TraesCS1B02G432600
Populus -


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cDNA sequences
Sobic.002G361400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
2 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
4 Sobic.002G111600 expressed protein -
5 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
6 Sobic.004G356800 OsRR3 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
7 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
8 Sobic.009G095100 expressed protein -
9 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
10 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
11 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
12 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
14 Sobic.003G025600 POLD3 - Putative DNA polymerase delta complex subunit, expressed K03504: DNA polymerase delta subunit 3
15 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
16 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
17 Sobic.004G323700 zinc finger family protein, putative, expressed -
18 Sobic.007G187600 pentatricopeptide, putative, expressed -
19 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
20 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic002G361400 Sobic002G361400 Sobic008G153500 Sobic008G153500 Sobic002G361400--Sobic008G153500 Sobic004G040200 Sobic004G040200 Sobic002G361400--Sobic004G040200 Sobic003G121300 Sobic003G121300 Sobic002G361400--Sobic003G121300 Sobic002G111600 Sobic002G111600 Sobic002G361400--Sobic002G111600 Sobic001G522600 Sobic001G522600 Sobic002G361400--Sobic001G522600 Sobic004G356800 Sobic004G356800 Sobic002G361400--Sobic004G356800 Sobic002G371700 Sobic002G371700 Sobic002G361400--Sobic002G371700 Sobic009G095100 Sobic009G095100 Sobic002G361400--Sobic009G095100 Sobic008G103300 Sobic008G103300 Sobic002G361400--Sobic008G103300 Sobic007G166400 Sobic007G166400 Sobic008G153500--Sobic007G166400 Sobic006G049700 Sobic006G049700 Sobic008G153500--Sobic006G049700 Sobic008G153500--Sobic002G361400 Sobic006G010000 Sobic006G010000 Sobic008G153500--Sobic006G010000 Sobic006G101700 Sobic006G101700 Sobic008G153500--Sobic006G101700 Sobic008G153500--Sobic009G095100 Sobic009G179700 Sobic009G179700 Sobic008G153500--Sobic009G179700 Sobic009G222500 Sobic009G222500 Sobic008G153500--Sobic009G222500 Sobic004G115350 Sobic004G115350 Sobic008G153500--Sobic004G115350 Sobic004G332400 Sobic004G332400 Sobic004G040200--Sobic004G332400 Sobic006G040800 Sobic006G040800 Sobic004G040200--Sobic006G040800 Sobic002G048700 Sobic002G048700 Sobic004G040200--Sobic002G048700 Sobic008G002500 Sobic008G002500 Sobic004G040200--Sobic008G002500 Sobic009G255600 Sobic009G255600 Sobic004G040200--Sobic009G255600 Sobic004G040200--Sobic002G361400 Sobic007G225100 Sobic007G225100 Sobic004G040200--Sobic007G225100 Sobic001G051700 Sobic001G051700 Sobic004G040200--Sobic001G051700 Sobic004G123400 Sobic004G123400 Sobic004G040200--Sobic004G123400 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic001G382600 Sobic001G382600 Sobic002G111600--Sobic001G382600 Sobic007G132100 Sobic007G132100 Sobic002G111600--Sobic007G132100 Sobic002G111600--Sobic007G225100 Sobic002G111600--Sobic008G103300 Sobic001G142100 Sobic001G142100 Sobic002G111600--Sobic001G142100 Sobic008G164600 Sobic008G164600 Sobic002G111600--Sobic008G164600 Sobic006G240100 Sobic006G240100 Sobic002G111600--Sobic006G240100 Sobic009G088000 Sobic009G088000 Sobic002G111600--Sobic009G088000 Sobic010G118000 Sobic010G118000 Sobic002G111600--Sobic010G118000 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G392300 Sobic001G392300 Sobic001G522600--Sobic001G392300 Sobic001G522600--Sobic008G002500 Sobic010G236400 Sobic010G236400 Sobic001G522600--Sobic010G236400 Sobic001G522600--Sobic009G095100 Sobic008G014500 Sobic008G014500 Sobic001G522600--Sobic008G014500 Sobic006G200700 Sobic006G200700 Sobic001G522600--Sobic006G200700 Sobic009G044800 Sobic009G044800 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic004G356800--Sobic002G361400 Sobic004G356800--Sobic004G040200 Sobic003G241100 Sobic003G241100 Sobic004G356800--Sobic003G241100 Sobic004G356800--Sobic004G123400 Sobic002G371300 Sobic002G371300 Sobic004G356800--Sobic002G371300 Sobic004G356800--Sobic004G332400 Sobic004G333800 Sobic004G333800 Sobic004G356800--Sobic004G333800 Sobic004G356800--Sobic007G225100 Sobic004G330000 Sobic004G330000 Sobic004G356800--Sobic004G330000 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic009G095100--Sobic001G522600 Sobic009G095100--Sobic007G061000 Sobic003G029100 Sobic003G029100 Sobic009G095100--Sobic003G029100 Sobic003G143200 Sobic003G143200 Sobic009G095100--Sobic003G143200 Sobic009G095100--Sobic009G179700 Sobic008G112800 Sobic008G112800 Sobic009G095100--Sobic008G112800 Sobic004G266900 Sobic004G266900 Sobic009G095100--Sobic004G266900 Sobic009G095100--Sobic008G153500 Sobic004G092500 Sobic004G092500 Sobic009G095100--Sobic004G092500 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500
Octagon: transcription factors


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