Gene annotation
Transcriptome id Sobic.003G025600.1
Synonym Sb03g002450, POLD3
Functional annotation POLD3 - Putative DNA polymerase delta complex subunit, expressed
UniProt C5XL75
Pfam PF09507
Panther DB PTHR17598
NCBI CDD -
KEGG Orthology K03504; DNA polymerase delta subunit 3
Gene Ontology GO:0006260; DNA replication GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G78650 : DNA-directed DNA polymerases
RAP-DB (Rice) LOC_Os01g10690.1 : POLD3 - Putative DNA polymerase delta complex subunit, expressed
MaizeGDB (Corn) Zm00025a035870 , Zm00025a040663 , Zm00025a013412 , Zm00025a022995 , Zm00025a002586 , Zm00025a029174 , Zm00025a029092 , Zm00025a017354 , Zm00025a033639 , Zm00025a045859 , Zm00025a032832 , Zm00025a052296 , Zm00025a020570
Brachypodium KQK03228
Barley HORVU3Hr1G026230.6 , HORVU3Hr1G026230.7 , HORVU3Hr1G026230.4 , HORVU3Hr1G026230.5 , HORVU3Hr1G026230.2 , HORVU3Hr1G026230.3 , HORVU3Hr1G026230.1
Wheat TraesCS3A02G138100 , TraesCS3A02G138100 , TraesCS3B02G155700 , TraesCS3B02G155700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G361400 frigida, putative, expressed -
2 Sobic.002G111600 expressed protein -
3 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
4 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
5 Sobic.002G428100 tim44-like domain containing protein, expressed K17804: mitochondrial import inner membrane translocase subunit TIM44
6 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
7 Sobic.010G204400 phox domain-containing protein, putative, expressed -
8 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
9 Sobic.007G093800 expressed protein -
10 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
11 Sobic.009G200500 Homeobox domain containing protein, expressed -
12 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
13 Sobic.007G132100 myrosinase precursor, putative, expressed -
14 Sobic.009G226400 dynamin family protein, putative, expressed -
15 Sobic.006G167600 heat shock protein DnaJ, putative, expressed -
16 Sobic.006G204800 APO, putative, expressed -
17 Sobic.007G162800 expressed protein -
18 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
19 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
20 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1


Gene co-expression network
sample Sobic003G025600 Sobic003G025600 Sobic002G361400 Sobic002G361400 Sobic003G025600--Sobic002G361400 Sobic002G111600 Sobic002G111600 Sobic003G025600--Sobic002G111600 Sobic006G200700 Sobic006G200700 Sobic003G025600--Sobic006G200700 Sobic006G195700 Sobic006G195700 Sobic003G025600--Sobic006G195700 Sobic002G428100 Sobic002G428100 Sobic003G025600--Sobic002G428100 Sobic007G184500 Sobic007G184500 Sobic003G025600--Sobic007G184500 Sobic010G204400 Sobic010G204400 Sobic003G025600--Sobic010G204400 Sobic004G178200 Sobic004G178200 Sobic003G025600--Sobic004G178200 Sobic007G093800 Sobic007G093800 Sobic003G025600--Sobic007G093800 Sobic008G153500 Sobic008G153500 Sobic002G361400--Sobic008G153500 Sobic004G040200 Sobic004G040200 Sobic002G361400--Sobic004G040200 Sobic003G121300 Sobic003G121300 Sobic002G361400--Sobic003G121300 Sobic002G361400--Sobic002G111600 Sobic001G522600 Sobic001G522600 Sobic002G361400--Sobic001G522600 Sobic004G356800 Sobic004G356800 Sobic002G361400--Sobic004G356800 Sobic002G371700 Sobic002G371700 Sobic002G361400--Sobic002G371700 Sobic009G095100 Sobic009G095100 Sobic002G361400--Sobic009G095100 Sobic008G103300 Sobic008G103300 Sobic002G361400--Sobic008G103300 Sobic001G382600 Sobic001G382600 Sobic002G111600--Sobic001G382600 Sobic007G132100 Sobic007G132100 Sobic002G111600--Sobic007G132100 Sobic007G225100 Sobic007G225100 Sobic002G111600--Sobic007G225100 Sobic002G111600--Sobic008G103300 Sobic001G142100 Sobic001G142100 Sobic002G111600--Sobic001G142100 Sobic008G164600 Sobic008G164600 Sobic002G111600--Sobic008G164600 Sobic006G240100 Sobic006G240100 Sobic002G111600--Sobic006G240100 Sobic009G088000 Sobic009G088000 Sobic002G111600--Sobic009G088000 Sobic010G118000 Sobic010G118000 Sobic002G111600--Sobic010G118000 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic010G236400 Sobic010G236400 Sobic006G195700--Sobic010G236400 Sobic002G056701 Sobic002G056701 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic002G260400 Sobic002G260400 Sobic006G195700--Sobic002G260400 Sobic010G245000 Sobic010G245000 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic001G099900 Sobic001G099900 Sobic002G428100--Sobic001G099900 Sobic001G211900 Sobic001G211900 Sobic002G428100--Sobic001G211900 Sobic008G018500 Sobic008G018500 Sobic002G428100--Sobic008G018500 Sobic009G077600 Sobic009G077600 Sobic002G428100--Sobic009G077600 Sobic004G059400 Sobic004G059400 Sobic002G428100--Sobic004G059400 Sobic002G131400 Sobic002G131400 Sobic002G428100--Sobic002G131400 Sobic002G428100--Sobic003G025600 Sobic003G146600 Sobic003G146600 Sobic002G428100--Sobic003G146600 Sobic008G055900 Sobic008G055900 Sobic002G428100--Sobic008G055900 Sobic001G360200 Sobic001G360200 Sobic007G184500--Sobic001G360200 Sobic001G033500 Sobic001G033500 Sobic007G184500--Sobic001G033500 Sobic007G077400 Sobic007G077400 Sobic007G184500--Sobic007G077400 Sobic006G044600 Sobic006G044600 Sobic007G184500--Sobic006G044600 Sobic009G058500 Sobic009G058500 Sobic007G184500--Sobic009G058500 Sobic006G278700 Sobic006G278700 Sobic007G184500--Sobic006G278700 Sobic007G184500--Sobic004G353000 Sobic007G184500--Sobic004G178200 Sobic010G073100 Sobic010G073100 Sobic007G184500--Sobic010G073100 Sobic006G163800 Sobic006G163800 Sobic010G204400--Sobic006G163800 Sobic010G204400--Sobic006G195700 Sobic007G218000 Sobic007G218000 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G204400--Sobic010G236400 Sobic010G204400--Sobic007G132100 Sobic003G416700 Sobic003G416700 Sobic010G204400--Sobic003G416700 Sobic006G131000 Sobic006G131000 Sobic010G204400--Sobic006G131000 Sobic010G204400--Sobic010G116600 Sobic004G178200--Sobic007G132100 Sobic004G178200--Sobic007G218000 Sobic006G136400 Sobic006G136400 Sobic004G178200--Sobic006G136400 Sobic004G178200--Sobic006G131000 Sobic006G126100 Sobic006G126100 Sobic004G178200--Sobic006G126100 Sobic006G012500 Sobic006G012500 Sobic004G178200--Sobic006G012500 Sobic004G178200--Sobic010G116600 Sobic002G303600 Sobic002G303600 Sobic004G178200--Sobic002G303600 Sobic004G039600 Sobic004G039600 Sobic004G178200--Sobic004G039600 Sobic008G124900 Sobic008G124900 Sobic007G093800--Sobic008G124900 Sobic007G093800--Sobic006G131000 Sobic007G093800--Sobic004G178200 Sobic009G068500 Sobic009G068500 Sobic007G093800--Sobic009G068500 Sobic008G046500 Sobic008G046500 Sobic007G093800--Sobic008G046500 Sobic010G278200 Sobic010G278200 Sobic007G093800--Sobic010G278200 Sobic003G264100 Sobic003G264100 Sobic007G093800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic007G093800--Sobic004G092500 Sobic007G093800--Sobic007G218000
Octagon: transcription factors


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