Gene annotation
Transcriptome id Sobic.003G284000.1,Sobic.003G284000.2
Synonym KIN10, Sb03g033530, AKIN10, SNRK1.1
Functional annotation CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5XJ05
Pfam PF14531 PF02149
Panther DB PTHR24343 PTHR24343:SF183
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07198; PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01090 : SNF1 kinase homolog 10
RAP-DB (Rice) LOC_Os05g45420.3 : CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a013241 , Zm00025a038010 , Zm00025a044262
Brachypodium KQK09576 , KQK09577 , KQK09575 , PNT70843 , PNT70842
Barley HORVU1Hr1G081310.1 , HORVU1Hr1G081310.2 , HORVU1Hr1G081310.3 , HORVU1Hr1G081310.4 , HORVU3Hr1G069190.6 , HORVU3Hr1G069190.4 , HORVU3Hr1G069190.5 , HORVU3Hr1G069190.2 , HORVU3Hr1G069190.3 , HORVU3Hr1G069190.1
Wheat TraesCS1B02G364800 , TraesCS3D02G282800 , TraesCS3D02G282800 , TraesCS1D02G353300 , TraesCS3A02G282800 , TraesCS3A02G282800 , TraesCS1A02G350500 , TraesCS3B02G316500 , TraesCS3B02G316500
Populus -


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cDNA sequences
Sobic.003G284000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G050900 dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed K03845: alpha-1,3-mannosyltransferase
2 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
3 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
4 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
5 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
6 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
9 Sobic.004G147500 tetratricopeptide repeat domain containing protein, expressed K09667: protein O-GlcNAc transferase
10 Sobic.006G239400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11366: USP22_27_51, ubiquitin carboxyl-terminal hydrolase 22/27/51
11 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
12 Sobic.001G097500 expressed protein -
13 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
14 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
15 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
16 Sobic.003G230600 transcription factor X1, putative, expressed -
17 Sobic.004G223300 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
18 Sobic.001G542450 - -
19 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
20 Sobic.001G118200 CASP, putative, expressed K09313: homeobox protein cut-like


Gene co-expression network
sample Sobic003G284000 Sobic003G284000 Sobic003G050900 Sobic003G050900 Sobic003G284000--Sobic003G050900 Sobic009G208100 Sobic009G208100 Sobic003G284000--Sobic009G208100 Sobic007G042900 Sobic007G042900 Sobic003G284000--Sobic007G042900 Sobic001G034500 Sobic001G034500 Sobic003G284000--Sobic001G034500 Sobic009G077600 Sobic009G077600 Sobic003G284000--Sobic009G077600 Sobic003G209200 Sobic003G209200 Sobic003G284000--Sobic003G209200 Sobic009G003700 Sobic009G003700 Sobic003G284000--Sobic009G003700 Sobic006G174850 Sobic006G174850 Sobic003G284000--Sobic006G174850 Sobic004G147500 Sobic004G147500 Sobic003G284000--Sobic004G147500 Sobic005G110499 Sobic005G110499 Sobic003G050900--Sobic005G110499 Sobic003G050900--Sobic009G003700 Sobic003G227100 Sobic003G227100 Sobic003G050900--Sobic003G227100 Sobic003G050900--Sobic003G284000 Sobic003G050900--Sobic003G209200 Sobic003G050900--Sobic009G077600 Sobic008G055900 Sobic008G055900 Sobic003G050900--Sobic008G055900 Sobic006G166200 Sobic006G166200 Sobic003G050900--Sobic006G166200 Sobic003G023300 Sobic003G023300 Sobic003G050900--Sobic003G023300 Sobic002G313900 Sobic002G313900 Sobic009G208100--Sobic002G313900 Sobic009G208100--Sobic003G284000 Sobic003G084000 Sobic003G084000 Sobic009G208100--Sobic003G084000 Sobic001G478800 Sobic001G478800 Sobic009G208100--Sobic001G478800 Sobic001G477700 Sobic001G477700 Sobic009G208100--Sobic001G477700 Sobic006G139100 Sobic006G139100 Sobic009G208100--Sobic006G139100 Sobic010G072800 Sobic010G072800 Sobic009G208100--Sobic010G072800 Sobic001G375600 Sobic001G375600 Sobic009G208100--Sobic001G375600 Sobic004G228800 Sobic004G228800 Sobic009G208100--Sobic004G228800 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic001G034500--Sobic001G477700 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G413800 Sobic001G413800 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic001G034500--Sobic007G042900 Sobic009G077600--Sobic003G209200 Sobic009G077600--Sobic008G055900 Sobic006G260500 Sobic006G260500 Sobic009G077600--Sobic006G260500 Sobic004G207900 Sobic004G207900 Sobic009G077600--Sobic004G207900 Sobic004G100200 Sobic004G100200 Sobic009G077600--Sobic004G100200 Sobic006G239400 Sobic006G239400 Sobic009G077600--Sobic006G239400 Sobic007G005500 Sobic007G005500 Sobic009G077600--Sobic007G005500 Sobic009G077600--Sobic003G050900 Sobic010G223300 Sobic010G223300 Sobic009G077600--Sobic010G223300 Sobic003G209200--Sobic007G005500 Sobic003G209200--Sobic006G260500 Sobic006G077300 Sobic006G077300 Sobic003G209200--Sobic006G077300 Sobic006G021700 Sobic006G021700 Sobic003G209200--Sobic006G021700 Sobic005G062200 Sobic005G062200 Sobic003G209200--Sobic005G062200 Sobic004G241900 Sobic004G241900 Sobic003G209200--Sobic004G241900 Sobic004G261600 Sobic004G261600 Sobic003G209200--Sobic004G261600 Sobic003G209200--Sobic005G110499 Sobic003G209200--Sobic009G077600 Sobic007G145400 Sobic007G145400 Sobic009G003700--Sobic007G145400 Sobic009G003700--Sobic003G050900 Sobic001G248100 Sobic001G248100 Sobic009G003700--Sobic001G248100 Sobic009G003700--Sobic001G097500 Sobic001G118200 Sobic001G118200 Sobic009G003700--Sobic001G118200 Sobic009G003700--Sobic005G110499 Sobic004G053500 Sobic004G053500 Sobic009G003700--Sobic004G053500 Sobic009G003700--Sobic004G147500 Sobic002G340900 Sobic002G340900 Sobic009G003700--Sobic002G340900 Sobic007G218000 Sobic007G218000 Sobic006G174850--Sobic007G218000 Sobic006G131000 Sobic006G131000 Sobic006G174850--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic006G174850--Sobic009G044800 Sobic001G273700 Sobic001G273700 Sobic006G174850--Sobic001G273700 Sobic003G379200 Sobic003G379200 Sobic006G174850--Sobic003G379200 Sobic006G174850--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic006G174850--Sobic001G263600 Sobic007G132100 Sobic007G132100 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic004G223300 Sobic004G223300 Sobic004G147500--Sobic004G223300 Sobic002G042600 Sobic002G042600 Sobic004G147500--Sobic002G042600 Sobic004G147500--Sobic005G062200 Sobic004G147500--Sobic003G209200 Sobic004G147500--Sobic002G340900 Sobic004G147500--Sobic009G003700 Sobic001G014300 Sobic001G014300 Sobic004G147500--Sobic001G014300 Sobic004G147500--Sobic004G053500 Sobic004G147500--Sobic006G166200
Octagon: transcription factors


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