Gene annotation
Transcriptome id Sobic.001G477700.3,Sobic.001G477700.1,Sobic.001G477700.4,Sobic.001G477700.2
Synonym Sb01g044740
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QQ15 , A0A1Z5SB50
Pfam PF00400
Panther DB PTHR15574 PTHR15574:SF40
NCBI CDD -
KEGG Orthology K11807; WDTC1, WD and tetratricopeptide repeats protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G10940 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g08830.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053233 , Zm00025a001006
Brachypodium KQK23224 , KQK23223
Barley HORVU4Hr1G078050.6 , HORVU4Hr1G078050.7 , HORVU4Hr1G078050.4 , HORVU4Hr1G078050.5 , HORVU4Hr1G078050.2 , HORVU4Hr1G078050.3 , HORVU4Hr1G078050.1 , HORVU4Hr1G078050.8 , HORVU4Hr1G078050.9 , HORVU4Hr1G078050.10 , HORVU4Hr1G078050.11 , HORVU4Hr1G078050.12
Wheat TraesCS4D02G301600 , TraesCS4D02G301600 , TraesCS4B02G303100 , TraesCS4A02G002000 , TraesCS4A02G002000
Populus PNT48933 , PNT48934 , PNT48935 , PNT36942 , PNT36943 , PNT36941 , PNT36946 , PNT36944 , PNT36945


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cDNA sequences
Sobic.001G477700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G131000 expressed protein K11968: ariadne-1
2 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
3 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
4 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
5 Sobic.007G196900 expressed protein -
6 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
7 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
8 Sobic.003G284000 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
9 Sobic.010G204400 phox domain-containing protein, putative, expressed -
10 Sobic.008G123500 auxilin, putative, expressed -
11 Sobic.004G316700 MYB family transcription factor, putative, expressed -
12 Sobic.003G227100 adaptin, putative, expressed -
13 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
14 Sobic.004G068500 CUE domain containing protein, expressed -
15 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
16 Sobic.004G257200 phosphatidylinositol transfer, putative, expressed -
17 Sobic.004G226600 expressed protein -
18 Sobic.008G040700 mRNA-decapping enzyme, putative, expressed K12611: mRNA-decapping enzyme 1B
19 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
20 Sobic.006G251000 STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -


Gene co-expression network
sample Sobic001G477700 Sobic001G477700 Sobic006G131000 Sobic006G131000 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic007G042900 Sobic007G042900 Sobic001G477700--Sobic007G042900 Sobic001G034500 Sobic001G034500 Sobic001G477700--Sobic001G034500 Sobic007G196900 Sobic007G196900 Sobic001G477700--Sobic007G196900 Sobic007G180600 Sobic007G180600 Sobic001G477700--Sobic007G180600 Sobic001G413800 Sobic001G413800 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic010G204400 Sobic010G204400 Sobic001G477700--Sobic010G204400 Sobic007G218000 Sobic007G218000 Sobic006G131000--Sobic007G218000 Sobic007G132100 Sobic007G132100 Sobic006G131000--Sobic007G132100 Sobic006G163800 Sobic006G163800 Sobic006G131000--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic006G131000--Sobic004G039600 Sobic006G131000--Sobic001G096000 Sobic006G174850 Sobic006G174850 Sobic006G131000--Sobic006G174850 Sobic010G275500 Sobic010G275500 Sobic006G131000--Sobic010G275500 Sobic001G369000 Sobic001G369000 Sobic006G131000--Sobic001G369000 Sobic004G178200 Sobic004G178200 Sobic006G131000--Sobic004G178200 Sobic001G096000--Sobic006G131000 Sobic008G124900 Sobic008G124900 Sobic001G096000--Sobic008G124900 Sobic006G126100 Sobic006G126100 Sobic001G096000--Sobic006G126100 Sobic003G332500 Sobic003G332500 Sobic001G096000--Sobic003G332500 Sobic003G104000 Sobic003G104000 Sobic001G096000--Sobic003G104000 Sobic003G337300 Sobic003G337300 Sobic001G096000--Sobic003G337300 Sobic001G096000--Sobic001G477700 Sobic001G163400 Sobic001G163400 Sobic001G096000--Sobic001G163400 Sobic001G362200 Sobic001G362200 Sobic001G096000--Sobic001G362200 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic001G034500--Sobic001G477700 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic001G034500--Sobic007G042900 Sobic007G196900--Sobic001G477700 Sobic008G123500 Sobic008G123500 Sobic007G196900--Sobic008G123500 Sobic001G095500 Sobic001G095500 Sobic007G196900--Sobic001G095500 Sobic010G093100 Sobic010G093100 Sobic007G196900--Sobic010G093100 Sobic002G306000 Sobic002G306000 Sobic007G196900--Sobic002G306000 Sobic001G538700 Sobic001G538700 Sobic007G196900--Sobic001G538700 Sobic004G353600 Sobic004G353600 Sobic007G196900--Sobic004G353600 Sobic001G251200 Sobic001G251200 Sobic007G196900--Sobic001G251200 Sobic007G196900--Sobic001G096000 Sobic007G180600--Sobic001G251200 Sobic004G228800 Sobic004G228800 Sobic007G180600--Sobic004G228800 Sobic007G180600--Sobic006G131000 Sobic008G185500 Sobic008G185500 Sobic007G180600--Sobic008G185500 Sobic007G180600--Sobic001G477700 Sobic001G522100 Sobic001G522100 Sobic007G180600--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic007G180600--Sobic004G261600 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200 Sobic001G413800--Sobic001G477700 Sobic006G180700 Sobic006G180700 Sobic001G413800--Sobic006G180700 Sobic001G413800--Sobic001G034500 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic001G413800--Sobic007G042900 Sobic001G413800--Sobic010G204400 Sobic004G068500 Sobic004G068500 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000 Sobic003G050900 Sobic003G050900 Sobic003G284000--Sobic003G050900 Sobic009G208100 Sobic009G208100 Sobic003G284000--Sobic009G208100 Sobic003G284000--Sobic007G042900 Sobic003G284000--Sobic001G034500 Sobic009G077600 Sobic009G077600 Sobic003G284000--Sobic009G077600 Sobic003G209200 Sobic003G209200 Sobic003G284000--Sobic003G209200 Sobic009G003700 Sobic009G003700 Sobic003G284000--Sobic009G003700 Sobic003G284000--Sobic006G174850 Sobic004G147500 Sobic004G147500 Sobic003G284000--Sobic004G147500 Sobic010G204400--Sobic006G163800 Sobic006G195700 Sobic006G195700 Sobic010G204400--Sobic006G195700 Sobic010G204400--Sobic007G218000 Sobic008G153000 Sobic008G153000 Sobic010G204400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic010G204400--Sobic010G236400 Sobic010G204400--Sobic007G132100 Sobic003G416700 Sobic003G416700 Sobic010G204400--Sobic003G416700 Sobic010G204400--Sobic006G131000 Sobic010G116600 Sobic010G116600 Sobic010G204400--Sobic010G116600
Octagon: transcription factors


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