Gene annotation
Transcriptome id Sobic.006G204800.1,Sobic.006G204800.2
Synonym APO4, Sb06g027590
Functional annotation APO, putative, expressed
UniProt C5YF74
Pfam PF05634
Panther DB PTHR10388 PTHR10388:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G21740 : Arabidopsis thaliana protein of unknown function (DUF794)
RAP-DB (Rice) LOC_Os04g53612.1 : APO, putative, expressed
MaizeGDB (Corn) Zm00025a009920
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
2 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
3 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
4 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
5 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
7 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
8 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
9 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
10 Sobic.010G116600 FHA domain containing protein, putative, expressed -
11 Sobic.010G204400 phox domain-containing protein, putative, expressed -
12 Sobic.002G126500 RNA recognition motif containing protein, expressed -
13 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
14 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
15 Sobic.007G183900 ubiquitin family protein, putative, expressed -
16 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
17 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
19 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
20 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -


Gene co-expression network
sample Sobic006G204800 Sobic006G204800 Sobic010G236400 Sobic010G236400 Sobic006G204800--Sobic010G236400 Sobic006G200700 Sobic006G200700 Sobic006G204800--Sobic006G200700 Sobic006G195700 Sobic006G195700 Sobic006G204800--Sobic006G195700 Sobic001G392300 Sobic001G392300 Sobic006G204800--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic006G204800--Sobic007G075900 Sobic008G112800 Sobic008G112800 Sobic006G204800--Sobic008G112800 Sobic001G522600 Sobic001G522600 Sobic006G204800--Sobic001G522600 Sobic004G353000 Sobic004G353000 Sobic006G204800--Sobic004G353000 Sobic004G084300 Sobic004G084300 Sobic006G204800--Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G200700--Sobic006G204800 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic006G195700--Sobic010G236400 Sobic002G056701 Sobic002G056701 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic002G260400 Sobic002G260400 Sobic006G195700--Sobic002G260400 Sobic010G245000 Sobic010G245000 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic008G112800--Sobic004G274200 Sobic008G112800--Sobic010G236400 Sobic008G112800--Sobic001G392300 Sobic008G112800--Sobic002G126500 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G179700 Sobic008G179700 Sobic008G112800--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic008G112800--Sobic001G124200 Sobic001G522600--Sobic007G061000 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic001G522600--Sobic008G014500 Sobic001G522600--Sobic006G200700 Sobic001G522600--Sobic009G044800 Sobic001G522600--Sobic007G183900 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400
Octagon: transcription factors


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