Gene annotation
Transcriptome id Sobic.009G143800.1,Sobic.009G143800.3,Sobic.009G143800.2
Synonym Sb09g020890
Functional annotation -
UniProt C5YY81 , A0A1Z5R3D2 , A0A1Z5R2M7
Pfam PF04851 PF13959 PF00271 PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF248
NCBI CDD KOG0330; ATP-dependent RNA helicase
KEGG Orthology K14806; DDX31, ATP-dependent RNA helicase DDX31/DBP7
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G40700 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g01990.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a037356
Brachypodium KQK08041
Barley HORVU1Hr1G004510.5 , HORVU1Hr1G004510.1 , HORVU1Hr1G004510.3 , HORVU1Hr1G004510.2 , HORVU1Hr1G004510.6 , HORVU1Hr1G004510.8 , HORVU1Hr1G004510.4 , HORVU1Hr1G004510.15 , HORVU1Hr1G004510.14 , HORVU1Hr1G004510.11 , HORVU1Hr1G004510.10 , HORVU1Hr1G004510.13 , HORVU1Hr1G004510.12
Wheat TraesCS1D02G031400 , TraesCS1A02G030500 , TraesCS1B02G037600
Populus -


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cDNA sequences
Sobic.009G143800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
2 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
3 Sobic.004G332400 neurochondrin family protein, putative, expressed -
4 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
5 Sobic.010G118000 PHD-finger family protein, expressed K17586: PHD and RING finger domain-containing protein 1
6 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.008G131000 domain of unknown function family protein, expressed -
9 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
10 Sobic.006G204800 APO, putative, expressed -
11 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
12 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
13 Sobic.010G186600 expressed protein -
14 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
15 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
16 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
18 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
19 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
20 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G143800 Sobic009G143800 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800 Sobic004G353000--Sobic006G200700 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic004G353000--Sobic001G291800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic006G040800 Sobic006G040800 Sobic004G332400--Sobic006G040800 Sobic008G002500 Sobic008G002500 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic001G346900 Sobic001G346900 Sobic004G332400--Sobic001G346900 Sobic004G332400--Sobic008G147200 Sobic004G040200 Sobic004G040200 Sobic004G332400--Sobic004G040200 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic010G118000--Sobic002G371300 Sobic006G148100 Sobic006G148100 Sobic010G118000--Sobic006G148100 Sobic009G255600 Sobic009G255600 Sobic010G118000--Sobic009G255600 Sobic003G266001 Sobic003G266001 Sobic010G118000--Sobic003G266001 Sobic010G266500 Sobic010G266500 Sobic010G118000--Sobic010G266500 Sobic010G118000--Sobic009G143800 Sobic010G118000--Sobic004G353000 Sobic007G225100 Sobic007G225100 Sobic010G118000--Sobic007G225100 Sobic010G118000--Sobic008G014500 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic006G200700--Sobic009G044800 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic001G291800--Sobic004G353000 Sobic001G291800--Sobic010G186600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900
Octagon: transcription factors


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