Gene annotation
Transcriptome id Sobic.010G118000.1
Synonym Sb10g010430
Functional annotation PHD-finger family protein, expressed
UniProt C5Z8M1
Pfam PF00628
Panther DB -
NCBI CDD -
KEGG Orthology K17586; PHD and RING finger domain-containing protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G05670 : RING/U-box protein
RAP-DB (Rice) LOC_Os06g17280.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a050485
Brachypodium KQK18600 , KQK18601 , PNT76066
Barley -
Wheat TraesCS7A02G212900 , TraesCS7B02G119600 , TraesCS7D02G214800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
2 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
3 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
4 Sobic.003G266001 - -
5 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
6 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
7 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
8 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
9 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
10 Sobic.003G416700 homeobox domain containing protein, expressed -
11 Sobic.008G164600 expressed protein -
12 Sobic.002G264200 RNA recognition motif containing protein, expressed -
13 Sobic.010G219400 endonuclease V, putative, expressed -
14 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
15 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
16 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
17 Sobic.008G131000 domain of unknown function family protein, expressed -
18 Sobic.001G219900 expressed protein -
19 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
20 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2


Gene co-expression network
sample Sobic010G118000 Sobic010G118000 Sobic002G371300 Sobic002G371300 Sobic010G118000--Sobic002G371300 Sobic006G148100 Sobic006G148100 Sobic010G118000--Sobic006G148100 Sobic009G255600 Sobic009G255600 Sobic010G118000--Sobic009G255600 Sobic003G266001 Sobic003G266001 Sobic010G118000--Sobic003G266001 Sobic010G266500 Sobic010G266500 Sobic010G118000--Sobic010G266500 Sobic009G143800 Sobic009G143800 Sobic010G118000--Sobic009G143800 Sobic004G353000 Sobic004G353000 Sobic010G118000--Sobic004G353000 Sobic007G225100 Sobic007G225100 Sobic010G118000--Sobic007G225100 Sobic008G014500 Sobic008G014500 Sobic010G118000--Sobic008G014500 Sobic001G273700 Sobic001G273700 Sobic002G371300--Sobic001G273700 Sobic007G132100 Sobic007G132100 Sobic002G371300--Sobic007G132100 Sobic005G172500 Sobic005G172500 Sobic002G371300--Sobic005G172500 Sobic003G118200 Sobic003G118200 Sobic002G371300--Sobic003G118200 Sobic002G371300--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic002G371300--Sobic004G178200 Sobic002G371300--Sobic010G118000 Sobic007G218000 Sobic007G218000 Sobic002G371300--Sobic007G218000 Sobic003G155900 Sobic003G155900 Sobic002G371300--Sobic003G155900 Sobic006G148100--Sobic005G172500 Sobic006G148100--Sobic010G118000 Sobic009G056200 Sobic009G056200 Sobic006G148100--Sobic009G056200 Sobic006G148100--Sobic002G371300 Sobic006G148100--Sobic004G353000 Sobic001G259000 Sobic001G259000 Sobic006G148100--Sobic001G259000 Sobic006G148100--Sobic009G143800 Sobic008G131000 Sobic008G131000 Sobic006G148100--Sobic008G131000 Sobic001G473600 Sobic001G473600 Sobic006G148100--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic009G255600--Sobic010G186600 Sobic003G416700 Sobic003G416700 Sobic009G255600--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic009G255600--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic009G255600--Sobic005G200800 Sobic009G119000 Sobic009G119000 Sobic009G255600--Sobic009G119000 Sobic002G029100 Sobic002G029100 Sobic009G255600--Sobic002G029100 Sobic003G042400 Sobic003G042400 Sobic009G255600--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic009G255600--Sobic001G291800 Sobic003G360400 Sobic003G360400 Sobic009G255600--Sobic003G360400 Sobic001G493200 Sobic001G493200 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic003G266001--Sobic003G408600 Sobic004G072100 Sobic004G072100 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900 Sobic008G164600 Sobic008G164600 Sobic010G266500--Sobic008G164600 Sobic007G187600 Sobic007G187600 Sobic010G266500--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic010G266500--Sobic001G023800 Sobic001G461400 Sobic001G461400 Sobic010G266500--Sobic001G461400 Sobic002G371700 Sobic002G371700 Sobic010G266500--Sobic002G371700 Sobic010G266500--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic010G266500--Sobic002G145800 Sobic004G155600 Sobic004G155600 Sobic010G266500--Sobic004G155600 Sobic010G266500--Sobic010G118000 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic009G143800--Sobic008G014500 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic009G143800--Sobic008G131000 Sobic009G143800--Sobic001G291800 Sobic004G353000--Sobic006G200700 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic004G353000--Sobic002G371300 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic004G353000--Sobic001G473600 Sobic004G353000--Sobic001G291800 Sobic004G277200 Sobic004G277200 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600
Octagon: transcription factors


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