Gene annotation
Transcriptome id Sobic.010G249100.1
Synonym SE, Sb10g028740
Functional annotation ZOS8-11 - C2H2 zinc finger protein, expressed
UniProt C5Z8V1
Pfam PF12066 PF04959
Panther DB PTHR13165
NCBI CDD KOG2295; C2H2 Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27100 : C2H2 zinc-finger protein SERRATE (SE)
RAP-DB (Rice) LOC_Os08g40560.1 : ZOS8-11 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a041792 , Zm00025a018344
Brachypodium KQK17364 , KQK17363
Barley HORVU6Hr1G021620.2 , HORVU7Hr1G097860.6 , HORVU7Hr1G097860.5 , HORVU7Hr1G097860.4 , HORVU7Hr1G097860.3 , HORVU7Hr1G097860.2 , HORVU7Hr1G097860.1 , HORVU7Hr1G097860.7 , HORVU6Hr1G021620.1 , HORVU6Hr1G021620.3 , HORVU6Hr1G021620.4
Wheat TraesCS7D02G416100 , TraesCS7D02G252800 , TraesCS7D02G252800 , TraesCS6A02G119000 , TraesCS6D02G108900 , TraesCS6B02G147000 , TraesCS7A02G423200 , TraesCS7B02G323700 , TraesCS7B02G323700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
2 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
3 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
4 Sobic.006G204800 APO, putative, expressed -
5 Sobic.010G118950 - -
6 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
7 Sobic.001G205200 expressed protein -
8 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
9 Sobic.010G275500 EF hand family protein, putative, expressed -
10 Sobic.010G116600 FHA domain containing protein, putative, expressed -
11 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
12 Sobic.006G200600 expressed protein -
13 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
14 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
15 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
16 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.003G102400 expressed protein -
18 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
19 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
20 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14


Gene co-expression network
sample Sobic010G249100 Sobic010G249100 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic008G124900 Sobic008G124900 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic004G146500 Sobic004G146500 Sobic001G220300--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic010G101800 Sobic010G101800 Sobic001G220300--Sobic010G101800 Sobic001G109800 Sobic001G109800 Sobic001G220300--Sobic001G109800 Sobic009G191000 Sobic009G191000 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G220300--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic001G220300--Sobic002G297200 Sobic007G093800 Sobic007G093800 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic010G236400 Sobic010G236400 Sobic006G204800--Sobic010G236400 Sobic006G200700 Sobic006G200700 Sobic006G204800--Sobic006G200700 Sobic006G195700 Sobic006G195700 Sobic006G204800--Sobic006G195700 Sobic006G204800--Sobic001G392300 Sobic006G204800--Sobic007G075900 Sobic008G112800 Sobic008G112800 Sobic006G204800--Sobic008G112800 Sobic001G522600 Sobic001G522600 Sobic006G204800--Sobic001G522600 Sobic006G204800--Sobic004G353000 Sobic004G084300 Sobic004G084300 Sobic006G204800--Sobic004G084300 Sobic004G351100 Sobic004G351100 Sobic010G118950--Sobic004G351100 Sobic004G277200 Sobic004G277200 Sobic010G118950--Sobic004G277200 Sobic010G116600 Sobic010G116600 Sobic010G118950--Sobic010G116600 Sobic010G118950--Sobic010G053800 Sobic002G299700 Sobic002G299700 Sobic010G118950--Sobic002G299700 Sobic001G441400 Sobic001G441400 Sobic010G118950--Sobic001G441400 Sobic004G091100 Sobic004G091100 Sobic010G118950--Sobic004G091100 Sobic010G118950--Sobic010G275500 Sobic001G196500 Sobic001G196500 Sobic010G118950--Sobic001G196500 Sobic006G012500 Sobic006G012500 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic004G072100 Sobic004G072100 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600 Sobic006G048500 Sobic006G048500 Sobic001G205200--Sobic006G048500 Sobic002G006900 Sobic002G006900 Sobic001G205200--Sobic002G006900 Sobic003G372700 Sobic003G372700 Sobic001G205200--Sobic003G372700 Sobic001G205200--Sobic002G297200 Sobic004G007100 Sobic004G007100 Sobic001G205200--Sobic004G007100 Sobic002G309600 Sobic002G309600 Sobic001G205200--Sobic002G309600 Sobic003G087400 Sobic003G087400 Sobic001G205200--Sobic003G087400 Sobic007G167500 Sobic007G167500 Sobic001G205200--Sobic007G167500 Sobic003G029700 Sobic003G029700 Sobic001G205200--Sobic003G029700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic010G275500--Sobic010G053800 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic010G275500--Sobic001G155000 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500
Octagon: transcription factors


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