Gene annotation
Transcriptome id Sobic.004G356800.1
Synonym ARR3, Sb04g038320
Functional annotation OsRR3 type-A response regulator, expressed
UniProt A0A1Z5RQJ6
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF520
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT1G59940 : response regulator 3
RAP-DB (Rice) LOC_Os02g58350.1 : OsRR3 type-A response regulator, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G094470.12 , HORVU6Hr1G094470.15
Wheat TraesCS6D02G401600 , TraesCS6A02G416400
Populus -


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cDNA sequences
Sobic.004G356800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G361400 frigida, putative, expressed -
2 Sobic.004G040200 CGMC_MAPKCMGC_2_SLT2y_ERK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
3 Sobic.003G241100 expressed protein K07765: S2P endopeptidase
4 Sobic.004G123400 MYB family transcription factor, putative, expressed K09420: MYB, transcriptional activator Myb
5 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
6 Sobic.004G332400 neurochondrin family protein, putative, expressed -
7 Sobic.004G333800 ribosomal RNA large subunit methyltransferase J, putative, expressed K14864: FTSJ1, tRNA (cytidine32/guanosine34-2'-O)-methyltransferase
8 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
9 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
10 Sobic.002G192200 proteasome subunit, putative, expressed -
11 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
12 Sobic.004G041200 expressed protein -
13 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
14 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
15 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
16 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
17 Sobic.001G067400 arv1, putative, expressed -
18 Sobic.002G009200 - K15456: protein KTI12
19 Sobic.001G542450 - -
20 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3


Gene co-expression network
sample Sobic004G356800 Sobic004G356800 Sobic002G361400 Sobic002G361400 Sobic004G356800--Sobic002G361400 Sobic004G040200 Sobic004G040200 Sobic004G356800--Sobic004G040200 Sobic003G241100 Sobic003G241100 Sobic004G356800--Sobic003G241100 Sobic004G123400 Sobic004G123400 Sobic004G356800--Sobic004G123400 Sobic002G371300 Sobic002G371300 Sobic004G356800--Sobic002G371300 Sobic004G332400 Sobic004G332400 Sobic004G356800--Sobic004G332400 Sobic004G333800 Sobic004G333800 Sobic004G356800--Sobic004G333800 Sobic007G225100 Sobic007G225100 Sobic004G356800--Sobic007G225100 Sobic004G330000 Sobic004G330000 Sobic004G356800--Sobic004G330000 Sobic008G153500 Sobic008G153500 Sobic002G361400--Sobic008G153500 Sobic002G361400--Sobic004G040200 Sobic003G121300 Sobic003G121300 Sobic002G361400--Sobic003G121300 Sobic002G111600 Sobic002G111600 Sobic002G361400--Sobic002G111600 Sobic001G522600 Sobic001G522600 Sobic002G361400--Sobic001G522600 Sobic002G361400--Sobic004G356800 Sobic002G371700 Sobic002G371700 Sobic002G361400--Sobic002G371700 Sobic009G095100 Sobic009G095100 Sobic002G361400--Sobic009G095100 Sobic008G103300 Sobic008G103300 Sobic002G361400--Sobic008G103300 Sobic004G040200--Sobic004G332400 Sobic006G040800 Sobic006G040800 Sobic004G040200--Sobic006G040800 Sobic002G048700 Sobic002G048700 Sobic004G040200--Sobic002G048700 Sobic008G002500 Sobic008G002500 Sobic004G040200--Sobic008G002500 Sobic009G255600 Sobic009G255600 Sobic004G040200--Sobic009G255600 Sobic004G040200--Sobic002G361400 Sobic004G040200--Sobic007G225100 Sobic001G051700 Sobic001G051700 Sobic004G040200--Sobic001G051700 Sobic004G040200--Sobic004G123400 Sobic004G040350 Sobic004G040350 Sobic003G241100--Sobic004G040350 Sobic008G087866 Sobic008G087866 Sobic003G241100--Sobic008G087866 Sobic009G165700 Sobic009G165700 Sobic003G241100--Sobic009G165700 Sobic002G211800 Sobic002G211800 Sobic003G241100--Sobic002G211800 Sobic003G166750 Sobic003G166750 Sobic003G241100--Sobic003G166750 Sobic001G111850 Sobic001G111850 Sobic003G241100--Sobic001G111850 Sobic004G140600 Sobic004G140600 Sobic003G241100--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic003G241100--Sobic003G170900 Sobic008G063300 Sobic008G063300 Sobic003G241100--Sobic008G063300 Sobic004G123400--Sobic004G040200 Sobic001G375600 Sobic001G375600 Sobic004G123400--Sobic001G375600 Sobic004G277200 Sobic004G277200 Sobic004G123400--Sobic004G277200 Sobic004G123400--Sobic007G225100 Sobic004G123400--Sobic004G332400 Sobic004G123400--Sobic008G002500 Sobic004G123400--Sobic006G040800 Sobic003G294600 Sobic003G294600 Sobic004G123400--Sobic003G294600 Sobic004G123400--Sobic002G111600 Sobic001G273700 Sobic001G273700 Sobic002G371300--Sobic001G273700 Sobic007G132100 Sobic007G132100 Sobic002G371300--Sobic007G132100 Sobic005G172500 Sobic005G172500 Sobic002G371300--Sobic005G172500 Sobic003G118200 Sobic003G118200 Sobic002G371300--Sobic003G118200 Sobic004G353000 Sobic004G353000 Sobic002G371300--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic002G371300--Sobic004G178200 Sobic010G118000 Sobic010G118000 Sobic002G371300--Sobic010G118000 Sobic007G218000 Sobic007G218000 Sobic002G371300--Sobic007G218000 Sobic003G155900 Sobic003G155900 Sobic002G371300--Sobic003G155900 Sobic004G332400--Sobic006G040800 Sobic004G332400--Sobic008G002500 Sobic004G321700 Sobic004G321700 Sobic004G332400--Sobic004G321700 Sobic009G143800 Sobic009G143800 Sobic004G332400--Sobic009G143800 Sobic003G188400 Sobic003G188400 Sobic004G332400--Sobic003G188400 Sobic002G425500 Sobic002G425500 Sobic004G332400--Sobic002G425500 Sobic001G346900 Sobic001G346900 Sobic004G332400--Sobic001G346900 Sobic008G147200 Sobic008G147200 Sobic004G332400--Sobic008G147200 Sobic004G332400--Sobic004G040200 Sobic002G059300 Sobic002G059300 Sobic004G333800--Sobic002G059300 Sobic009G138700 Sobic009G138700 Sobic004G333800--Sobic009G138700 Sobic004G333800--Sobic009G143800 Sobic004G333800--Sobic001G522600 Sobic001G067400 Sobic001G067400 Sobic004G333800--Sobic001G067400 Sobic009G123600 Sobic009G123600 Sobic004G333800--Sobic009G123600 Sobic004G202500 Sobic004G202500 Sobic004G333800--Sobic004G202500 Sobic003G178900 Sobic003G178900 Sobic004G333800--Sobic003G178900 Sobic007G077400 Sobic007G077400 Sobic004G333800--Sobic007G077400 Sobic007G225100--Sobic004G277200 Sobic001G313700 Sobic001G313700 Sobic007G225100--Sobic001G313700 Sobic002G299000 Sobic002G299000 Sobic007G225100--Sobic002G299000 Sobic003G337300 Sobic003G337300 Sobic007G225100--Sobic003G337300 Sobic002G366400 Sobic002G366400 Sobic007G225100--Sobic002G366400 Sobic003G104000 Sobic003G104000 Sobic007G225100--Sobic003G104000 Sobic008G099800 Sobic008G099800 Sobic007G225100--Sobic008G099800 Sobic001G124200 Sobic001G124200 Sobic007G225100--Sobic001G124200 Sobic002G045600 Sobic002G045600 Sobic007G225100--Sobic002G045600 Sobic010G086600 Sobic010G086600 Sobic004G330000--Sobic010G086600 Sobic002G193300 Sobic002G193300 Sobic004G330000--Sobic002G193300 Sobic007G042900 Sobic007G042900 Sobic004G330000--Sobic007G042900 Sobic002G369701 Sobic002G369701 Sobic004G330000--Sobic002G369701 Sobic002G313900 Sobic002G313900 Sobic004G330000--Sobic002G313900 Sobic001G340300 Sobic001G340300 Sobic004G330000--Sobic001G340300 Sobic008G002300 Sobic008G002300 Sobic004G330000--Sobic008G002300 Sobic001G542450 Sobic001G542450 Sobic004G330000--Sobic001G542450 Sobic003G132000 Sobic003G132000 Sobic004G330000--Sobic003G132000
Octagon: transcription factors


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