Gene annotation
Transcriptome id Sobic.004G330000.1,Sobic.004G330000.2
Synonym Sb04g035895, ATRH1, RH1
Functional annotation -
UniProt C5XUG2
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF68
NCBI CDD KOG0350; DEAD-box ATP-dependent RNA helicase
KEGG Orthology K14807; DDX51, ATP-dependent RNA helicase DDX51/DBP6
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G15850 : RNA helicase 1
RAP-DB (Rice) LOC_Os02g55260.1,LOC_Os02g55260.2 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a022468 , Zm00025a022957 , Zm00025a032938
Brachypodium PNT69341 , PNT69342 , KQK01147 , KQK01146 , KQK01145 , KQK01144
Barley HORVU6Hr1G085490.4 , HORVU6Hr1G085490.5 , HORVU6Hr1G085490.6 , HORVU6Hr1G085490.1 , HORVU6Hr1G085490.2 , HORVU6Hr1G085490.3
Wheat TraesCS3D02G247800 , TraesCS3A02G243600 , TraesCS6D02G341300 , TraesCS6A02G358500 , TraesCS6A02G358500
Populus -


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cDNA sequences
Sobic.004G330000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
2 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
4 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
5 Sobic.002G313900 potassium transporter, putative, expressed -
6 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
7 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
8 Sobic.001G542450 - -
9 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
10 Sobic.004G356800 OsRR3 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
11 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
12 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
13 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
14 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
15 Sobic.007G187600 pentatricopeptide, putative, expressed -
16 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
17 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
18 Sobic.009G249700 expressed protein -
19 Sobic.002G292900 protein binding protein, putative, expressed -
20 Sobic.001G386100 RNA recognition motif containing protein, putative, expressed K13157: U11/U12 small nuclear ribonucleoprotein 65 kDa protein


Gene co-expression network
sample Sobic004G330000 Sobic004G330000 Sobic010G086600 Sobic010G086600 Sobic004G330000--Sobic010G086600 Sobic002G193300 Sobic002G193300 Sobic004G330000--Sobic002G193300 Sobic007G042900 Sobic007G042900 Sobic004G330000--Sobic007G042900 Sobic002G369701 Sobic002G369701 Sobic004G330000--Sobic002G369701 Sobic002G313900 Sobic002G313900 Sobic004G330000--Sobic002G313900 Sobic001G340300 Sobic001G340300 Sobic004G330000--Sobic001G340300 Sobic008G002300 Sobic008G002300 Sobic004G330000--Sobic008G002300 Sobic001G542450 Sobic001G542450 Sobic004G330000--Sobic001G542450 Sobic003G132000 Sobic003G132000 Sobic004G330000--Sobic003G132000 Sobic010G086600--Sobic007G042900 Sobic010G086600--Sobic002G193300 Sobic010G086600--Sobic001G542450 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic009G249700 Sobic009G249700 Sobic002G193300--Sobic009G249700 Sobic002G193300--Sobic010G086600 Sobic009G119000 Sobic009G119000 Sobic002G193300--Sobic009G119000 Sobic003G093800 Sobic003G093800 Sobic002G193300--Sobic003G093800 Sobic004G353000 Sobic004G353000 Sobic002G193300--Sobic004G353000 Sobic002G193300--Sobic007G042900 Sobic003G212900 Sobic003G212900 Sobic002G193300--Sobic003G212900 Sobic002G193300--Sobic010G089400 Sobic003G362600 Sobic003G362600 Sobic002G193300--Sobic003G362600 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic002G369701--Sobic010G086600 Sobic002G369701--Sobic001G542450 Sobic002G369701--Sobic004G330000 Sobic001G004100 Sobic001G004100 Sobic002G369701--Sobic001G004100 Sobic002G398700 Sobic002G398700 Sobic002G369701--Sobic002G398700 Sobic003G222000 Sobic003G222000 Sobic002G369701--Sobic003G222000 Sobic004G031300 Sobic004G031300 Sobic002G369701--Sobic004G031300 Sobic006G212900 Sobic006G212900 Sobic002G369701--Sobic006G212900 Sobic002G369701--Sobic007G042900 Sobic009G166600 Sobic009G166600 Sobic002G313900--Sobic009G166600 Sobic009G208100 Sobic009G208100 Sobic002G313900--Sobic009G208100 Sobic002G313900--Sobic006G139100 Sobic002G313900--Sobic002G292900 Sobic006G210700 Sobic006G210700 Sobic002G313900--Sobic006G210700 Sobic008G021000 Sobic008G021000 Sobic002G313900--Sobic008G021000 Sobic002G313900--Sobic009G249700 Sobic001G478800 Sobic001G478800 Sobic002G313900--Sobic001G478800 Sobic002G313900--Sobic003G212900 Sobic009G228000 Sobic009G228000 Sobic001G340300--Sobic009G228000 Sobic003G043000 Sobic003G043000 Sobic001G340300--Sobic003G043000 Sobic009G194000 Sobic009G194000 Sobic001G340300--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic001G340300--Sobic003G181700 Sobic001G340300--Sobic001G042200 Sobic001G340300--Sobic009G166600 Sobic010G077500 Sobic010G077500 Sobic001G340300--Sobic010G077500 Sobic003G363700 Sobic003G363700 Sobic001G340300--Sobic003G363700 Sobic009G107300 Sobic009G107300 Sobic001G340300--Sobic009G107300 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic002G029100 Sobic002G029100 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G132000--Sobic003G363700
Octagon: transcription factors


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