Gene annotation
Transcriptome id Sobic.001G386100.1
Synonym Sb01g036600
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5X1Q3
Pfam PF00076
Panther DB PTHR16105 PTHR16105:SF0
NCBI CDD KOG0114; Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K13157; U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G09230 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g21020.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002281
Brachypodium KQK05136 , KQK05134 , KQK05135 , KQK05133
Barley HORVU1Hr1G044500.18 , HORVU1Hr1G044500.19 , HORVU1Hr1G044500.14 , HORVU1Hr1G044500.15 , HORVU1Hr1G044500.16 , HORVU1Hr1G044500.11 , HORVU1Hr1G044500.13 , HORVU1Hr1G044500.21 , HORVU1Hr1G044500.20 , HORVU1Hr1G044500.23 , HORVU1Hr1G044500.22 , HORVU1Hr1G044500.12 , HORVU1Hr1G044500.6 , HORVU1Hr1G044500.7 , HORVU1Hr1G044500.4 , HORVU1Hr1G044500.5 , HORVU1Hr1G044500.2 , HORVU1Hr1G044500.3 , HORVU1Hr1G044500.1 , HORVU1Hr1G044500.8 , HORVU1Hr1G044500.17
Wheat TraesCS1A02G171500 , TraesCS1D02G171900 , TraesCS6B02G124200 , TraesCS1B02G185400 , TraesCS6D02G086800 , TraesCS6A02G096000
Populus -


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cDNA sequences
Sobic.001G386100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
2 Sobic.002G292900 protein binding protein, putative, expressed -
3 Sobic.001G542450 - -
4 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
5 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
6 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
7 Sobic.006G210700 potassium transporter, putative, expressed -
8 Sobic.009G249700 expressed protein -
9 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
10 Sobic.005G133800 NEF1, putative, expressed -
11 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
12 Sobic.006G224800 expressed protein -
13 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
14 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
15 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
16 Sobic.003G212900 zinc ion binding protein, putative, expressed -
17 Sobic.004G209700 FAR1 family protein, expressed -
18 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
19 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
20 Sobic.007G005500 ECT protein, putative, expressed -


Gene co-expression network
sample Sobic001G386100 Sobic001G386100 Sobic010G086600 Sobic010G086600 Sobic001G386100--Sobic010G086600 Sobic002G292900 Sobic002G292900 Sobic001G386100--Sobic002G292900 Sobic001G542450 Sobic001G542450 Sobic001G386100--Sobic001G542450 Sobic002G245000 Sobic002G245000 Sobic001G386100--Sobic002G245000 Sobic007G042900 Sobic007G042900 Sobic001G386100--Sobic007G042900 Sobic002G369701 Sobic002G369701 Sobic001G386100--Sobic002G369701 Sobic006G210700 Sobic006G210700 Sobic001G386100--Sobic006G210700 Sobic009G249700 Sobic009G249700 Sobic001G386100--Sobic009G249700 Sobic004G320700 Sobic004G320700 Sobic001G386100--Sobic004G320700 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic002G292900--Sobic004G320700 Sobic010G244900 Sobic010G244900 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic006G032300 Sobic006G032300 Sobic002G292900--Sobic006G032300 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic001G237600 Sobic001G237600 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G029100 Sobic002G029100 Sobic002G245000--Sobic002G029100 Sobic002G245000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic002G245000--Sobic001G135500 Sobic002G245000--Sobic003G062300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic002G245000--Sobic006G032300 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic002G369701--Sobic010G086600 Sobic002G369701--Sobic001G542450 Sobic004G330000 Sobic004G330000 Sobic002G369701--Sobic004G330000 Sobic001G004100 Sobic001G004100 Sobic002G369701--Sobic001G004100 Sobic002G398700 Sobic002G398700 Sobic002G369701--Sobic002G398700 Sobic003G222000 Sobic003G222000 Sobic002G369701--Sobic003G222000 Sobic004G031300 Sobic004G031300 Sobic002G369701--Sobic004G031300 Sobic006G212900 Sobic006G212900 Sobic002G369701--Sobic006G212900 Sobic002G369701--Sobic007G042900 Sobic001G114200 Sobic001G114200 Sobic006G210700--Sobic001G114200 Sobic006G210700--Sobic009G166600 Sobic006G128100 Sobic006G128100 Sobic006G210700--Sobic006G128100 Sobic009G186700 Sobic009G186700 Sobic006G210700--Sobic009G186700 Sobic006G210700--Sobic010G169900 Sobic006G210700--Sobic002G313900 Sobic007G148400 Sobic007G148400 Sobic006G210700--Sobic007G148400 Sobic002G076500 Sobic002G076500 Sobic006G210700--Sobic002G076500 Sobic001G490900 Sobic001G490900 Sobic006G210700--Sobic001G490900 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic009G249700--Sobic003G394200 Sobic009G249700--Sobic005G034700 Sobic009G249700--Sobic004G345400 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic009G249700--Sobic007G042900 Sobic004G320700--Sobic002G292900 Sobic004G320700--Sobic001G237600 Sobic002G079000 Sobic002G079000 Sobic004G320700--Sobic002G079000 Sobic010G186100 Sobic010G186100 Sobic004G320700--Sobic010G186100 Sobic004G320700--Sobic010G244900 Sobic004G320700--Sobic006G210700 Sobic007G087000 Sobic007G087000 Sobic004G320700--Sobic007G087000 Sobic004G320700--Sobic006G032300 Sobic009G228000 Sobic009G228000 Sobic004G320700--Sobic009G228000
Octagon: transcription factors


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