Gene annotation
Transcriptome id Sobic.004G320700.1
Synonym AtVIP2, VIP2, Sb04g035110
Functional annotation CCR4-NOT transcription factor, putative, expressed
UniProt C5XTP2
Pfam PF04153
Panther DB PTHR23326 PTHR23326:SF6
NCBI CDD -
KEGG Orthology K12605; CNOT2, CCR4-NOT transcription complex subunit 2
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G59710 : VIRE2 interacting protein 2
RAP-DB (Rice) LOC_Os02g54120.4 : CCR4-NOT transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a033013
Brachypodium KQJ85251 , PNT62125 , PNT62124 , PNT62127 , PNT62126
Barley HORVU1Hr1G085740.9 , HORVU1Hr1G085740.3 , HORVU1Hr1G085740.7 , HORVU1Hr1G085740.6 , HORVU1Hr1G085740.5 , HORVU5Hr1G078050.3 , HORVU5Hr1G078050.2 , HORVU5Hr1G078050.1 , HORVU5Hr1G078050.7 , HORVU5Hr1G078050.6 , HORVU5Hr1G078050.5 , HORVU5Hr1G078050.4 , HORVU5Hr1G078050.9 , HORVU1Hr1G085740.10 , HORVU5Hr1G078050.10 , HORVU6Hr1G095320.9 , HORVU6Hr1G095320.8 , HORVU6Hr1G095320.3 , HORVU6Hr1G095320.2 , HORVU6Hr1G095320.1 , HORVU6Hr1G095320.6 , HORVU6Hr1G095320.5 , HORVU6Hr1G095320.4 , HORVU6Hr1G095320.20 , HORVU6Hr1G095320.21 , HORVU1Hr1G085740.23 , HORVU1Hr1G085740.26 , HORVU1Hr1G085740.27 , HORVU1Hr1G085740.25 , HORVU1Hr1G085740.28 , HORVU1Hr1G085740.29 , HORVU5Hr1G077990.1 , HORVU1Hr1G085740.19 , HORVU1Hr1G085740.11 , HORVU5Hr1G078050.8 , HORVU6Hr1G095320.19 , HORVU6Hr1G095320.18 , HORVU6Hr1G095320.13 , HORVU6Hr1G095320.12 , HORVU6Hr1G095320.11 , HORVU6Hr1G095320.10 , HORVU6Hr1G095320.17 , HORVU6Hr1G095320.16 , HORVU6Hr1G095320.15 , HORVU6Hr1G095320.14
Wheat TraesCS6A02G418900 , TraesCS6B02G470500 , TraesCS6B02G470500 , TraesCS5D02G303200 , TraesCS5A02G295700 , TraesCS6D02G407800 , TraesCS5B02G295200 , TraesCS5D02G303200 , TraesCS5B02G295200 , TraesCS5B02G295200 , TraesCS5B02G295200 , TraesCS5B02G295200 , TraesCS6D02G407800 , TraesCS5B02G295200 , TraesCS5A02G295700
Populus -


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cDNA sequences
Sobic.004G320700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G292900 protein binding protein, putative, expressed -
2 Sobic.001G237600 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
3 Sobic.002G079000 expressed protein -
4 Sobic.010G186100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.010G244900 auxin efflux carrier, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.006G210700 potassium transporter, putative, expressed -
7 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
8 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
9 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
11 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
12 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
13 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
14 Sobic.006G179100 transmembrane protein, putative, expressed -
15 Sobic.003G043000 expressed protein -
16 Sobic.002G313900 potassium transporter, putative, expressed -
17 Sobic.010G226000 expressed protein -
18 Sobic.009G166600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
20 Sobic.002G076500 protein Kinase-associated protein phosphatase, putative, expressed K01090: protein phosphatase


Gene co-expression network
sample Sobic004G320700 Sobic004G320700 Sobic002G292900 Sobic002G292900 Sobic004G320700--Sobic002G292900 Sobic001G237600 Sobic001G237600 Sobic004G320700--Sobic001G237600 Sobic002G079000 Sobic002G079000 Sobic004G320700--Sobic002G079000 Sobic010G186100 Sobic010G186100 Sobic004G320700--Sobic010G186100 Sobic010G244900 Sobic010G244900 Sobic004G320700--Sobic010G244900 Sobic006G210700 Sobic006G210700 Sobic004G320700--Sobic006G210700 Sobic007G087000 Sobic007G087000 Sobic004G320700--Sobic007G087000 Sobic006G032300 Sobic006G032300 Sobic004G320700--Sobic006G032300 Sobic009G228000 Sobic009G228000 Sobic004G320700--Sobic009G228000 Sobic002G292900--Sobic004G320700 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic002G292900--Sobic006G032300 Sobic010G086600 Sobic010G086600 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic003G363700 Sobic003G363700 Sobic001G237600--Sobic003G363700 Sobic001G237600--Sobic004G320700 Sobic001G237600--Sobic002G079000 Sobic001G237600--Sobic007G087000 Sobic006G039400 Sobic006G039400 Sobic001G237600--Sobic006G039400 Sobic003G202600 Sobic003G202600 Sobic001G237600--Sobic003G202600 Sobic001G237600--Sobic010G244900 Sobic001G095000 Sobic001G095000 Sobic001G237600--Sobic001G095000 Sobic001G237600--Sobic002G292900 Sobic002G079000--Sobic007G087000 Sobic010G169900 Sobic010G169900 Sobic002G079000--Sobic010G169900 Sobic010G213500 Sobic010G213500 Sobic002G079000--Sobic010G213500 Sobic004G198600 Sobic004G198600 Sobic002G079000--Sobic004G198600 Sobic006G128100 Sobic006G128100 Sobic002G079000--Sobic006G128100 Sobic006G250800 Sobic006G250800 Sobic002G079000--Sobic006G250800 Sobic007G172700 Sobic007G172700 Sobic002G079000--Sobic007G172700 Sobic002G079000--Sobic001G237600 Sobic001G490900 Sobic001G490900 Sobic002G079000--Sobic001G490900 Sobic010G186100--Sobic004G320700 Sobic010G186100--Sobic010G244900 Sobic002G031900 Sobic002G031900 Sobic010G186100--Sobic002G031900 Sobic010G186100--Sobic006G032300 Sobic010G186100--Sobic001G237600 Sobic010G186100--Sobic002G292900 Sobic010G071100 Sobic010G071100 Sobic010G186100--Sobic010G071100 Sobic004G209700 Sobic004G209700 Sobic010G186100--Sobic004G209700 Sobic003G329900 Sobic003G329900 Sobic010G186100--Sobic003G329900 Sobic004G172500 Sobic004G172500 Sobic010G244900--Sobic004G172500 Sobic010G244900--Sobic002G292900 Sobic004G213800 Sobic004G213800 Sobic010G244900--Sobic004G213800 Sobic010G244900--Sobic001G237600 Sobic010G244900--Sobic004G320700 Sobic010G244900--Sobic006G039400 Sobic003G043000 Sobic003G043000 Sobic010G244900--Sobic003G043000 Sobic003G241700 Sobic003G241700 Sobic010G244900--Sobic003G241700 Sobic005G150600 Sobic005G150600 Sobic010G244900--Sobic005G150600 Sobic001G114200 Sobic001G114200 Sobic006G210700--Sobic001G114200 Sobic006G210700--Sobic009G166600 Sobic006G210700--Sobic006G128100 Sobic009G186700 Sobic009G186700 Sobic006G210700--Sobic009G186700 Sobic006G210700--Sobic010G169900 Sobic006G210700--Sobic002G313900 Sobic007G148400 Sobic007G148400 Sobic006G210700--Sobic007G148400 Sobic002G076500 Sobic002G076500 Sobic006G210700--Sobic002G076500 Sobic006G210700--Sobic001G490900 Sobic007G087000--Sobic002G079000 Sobic007G076400 Sobic007G076400 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic008G116700 Sobic008G116700 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic009G107300 Sobic009G107300 Sobic007G087000--Sobic009G107300 Sobic002G335600 Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300 Sobic009G228000--Sobic009G107300 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700
Octagon: transcription factors


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