Gene annotation
Transcriptome id Sobic.010G086600.5,Sobic.010G086600.3,Sobic.010G086600.4,Sobic.010G086600.6,Sobic.010G086600.2
Synonym 4, Sb10g007510, CYCT1
Functional annotation cyclin-T1-4, putative, expressed
UniProt A0A1W0VS02 , A0A1W0VRZ7 , C5Z6W0
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF75 PTHR10026 PTHR10026:SF74
NCBI CDD KOG0834; CDK9 kinase-activating protein cyclin T KOG0794CDK8 kinase-activating protein cyclin C
KEGG Orthology K15188; cyclin T
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G45190 : Cyclin family protein
RAP-DB (Rice) LOC_Os12g30020.2,LOC_Os12g30020.1 : cyclin-T1-4, putative, expressed
MaizeGDB (Corn) Zm00025a056705 , Zm00025a000252
Brachypodium KQK19297
Barley HORVU4Hr1G021250.2 , HORVU4Hr1G021250.3 , HORVU4Hr1G021250.1 , HORVU4Hr1G021250.6 , HORVU4Hr1G021250.7 , HORVU4Hr1G021250.4 , HORVU4Hr1G021250.5 , HORVU4Hr1G021250.8 , HORVU4Hr1G021250.9 , HORVU2Hr1G083340.8 , HORVU2Hr1G083340.9 , HORVU2Hr1G083340.6 , HORVU2Hr1G083340.7 , HORVU2Hr1G083340.5 , HORVU2Hr1G083340.2 , HORVU2Hr1G083340.3 , HORVU2Hr1G083340.1 , HORVU0Hr1G007890.2 , HORVU0Hr1G007890.3 , HORVU4Hr1G021250.10 , HORVU4Hr1G021250.11 , HORVU4Hr1G021250.13 , HORVU4Hr1G021250.14 , HORVU4Hr1G021250.15 , HORVU4Hr1G021250.16 , HORVU4Hr1G021250.17 , HORVU4Hr1G021250.18 , HORVU4Hr1G021250.19 , HORVU4Hr1G021250.25 , HORVU4Hr1G021250.24 , HORVU4Hr1G021250.21 , HORVU4Hr1G021250.20 , HORVU4Hr1G021250.23 , HORVU4Hr1G021250.22
Wheat TraesCS2B02G358600 , TraesCS4B02G116000 , TraesCS5D02G121900 , TraesCS2D02G339400 , TraesCS2D02G339400 , TraesCS4D02G113600 , TraesCS5A02G103900 , TraesCS5B02G112100 , TraesCS5B02G112100 , TraesCS4A02G199300 , TraesCS2A02G323500 , TraesCS4D02G113400
Populus PNT35868 , PNT35864 , PNT35865 , PNT35866 , PNT35867 , PNT27481 , PNT27480 , PNT27483 , PNT27482 , PNT27479


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
2 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
3 Sobic.001G542450 - -
4 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
5 Sobic.002G292900 protein binding protein, putative, expressed -
6 Sobic.010G089400 TLD family protein, putative, expressed -
7 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
8 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
9 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
10 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
11 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
12 Sobic.009G249700 expressed protein -
13 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
14 Sobic.001G386100 RNA recognition motif containing protein, putative, expressed K13157: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
15 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
16 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
17 Sobic.010G226000 expressed protein -
18 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
20 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -


Gene co-expression network
sample Sobic010G086600 Sobic010G086600 Sobic007G042900 Sobic007G042900 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic001G542450 Sobic001G542450 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic002G193300--Sobic009G249700 Sobic002G193300--Sobic010G086600 Sobic009G119000 Sobic009G119000 Sobic002G193300--Sobic009G119000 Sobic003G093800 Sobic003G093800 Sobic002G193300--Sobic003G093800 Sobic004G353000 Sobic004G353000 Sobic002G193300--Sobic004G353000 Sobic002G193300--Sobic007G042900 Sobic003G212900 Sobic003G212900 Sobic002G193300--Sobic003G212900 Sobic002G193300--Sobic010G089400 Sobic003G362600 Sobic003G362600 Sobic002G193300--Sobic003G362600 Sobic001G542450--Sobic008G002300 Sobic003G416700 Sobic003G416700 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic003G062300 Sobic003G062300 Sobic001G542450--Sobic003G062300 Sobic006G224800 Sobic006G224800 Sobic001G542450--Sobic006G224800 Sobic002G295500 Sobic002G295500 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic002G029100 Sobic002G029100 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic004G320700 Sobic004G320700 Sobic002G292900--Sobic004G320700 Sobic010G244900 Sobic010G244900 Sobic002G292900--Sobic010G244900 Sobic009G166600 Sobic009G166600 Sobic002G292900--Sobic009G166600 Sobic002G313900 Sobic002G313900 Sobic002G292900--Sobic002G313900 Sobic002G292900--Sobic006G032300 Sobic002G292900--Sobic010G086600 Sobic005G034700 Sobic005G034700 Sobic002G292900--Sobic005G034700 Sobic001G237600 Sobic001G237600 Sobic002G292900--Sobic001G237600 Sobic001G340300 Sobic001G340300 Sobic002G292900--Sobic001G340300 Sobic005G100700 Sobic005G100700 Sobic010G089400--Sobic005G100700 Sobic010G021500 Sobic010G021500 Sobic010G089400--Sobic010G021500 Sobic006G096900 Sobic006G096900 Sobic010G089400--Sobic006G096900 Sobic002G211800 Sobic002G211800 Sobic010G089400--Sobic002G211800 Sobic010G089400--Sobic010G086600 Sobic010G226000 Sobic010G226000 Sobic010G089400--Sobic010G226000 Sobic010G089400--Sobic003G362600 Sobic004G311400 Sobic004G311400 Sobic010G089400--Sobic004G311400 Sobic007G159900 Sobic007G159900 Sobic010G089400--Sobic007G159900 Sobic001G273700 Sobic001G273700 Sobic002G371300--Sobic001G273700 Sobic007G132100 Sobic007G132100 Sobic002G371300--Sobic007G132100 Sobic005G172500 Sobic005G172500 Sobic002G371300--Sobic005G172500 Sobic003G118200 Sobic003G118200 Sobic002G371300--Sobic003G118200 Sobic002G371300--Sobic004G353000 Sobic004G178200 Sobic004G178200 Sobic002G371300--Sobic004G178200 Sobic010G118000 Sobic010G118000 Sobic002G371300--Sobic010G118000 Sobic007G218000 Sobic007G218000 Sobic002G371300--Sobic007G218000 Sobic003G155900 Sobic003G155900 Sobic002G371300--Sobic003G155900 Sobic003G095900 Sobic003G095900 Sobic006G088200--Sobic003G095900 Sobic003G360400 Sobic003G360400 Sobic006G088200--Sobic003G360400 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic002G133300 Sobic002G133300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic001G433800 Sobic001G433800 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic001G251200 Sobic001G251200 Sobic007G180600--Sobic001G251200 Sobic004G228800 Sobic004G228800 Sobic007G180600--Sobic004G228800 Sobic006G131000 Sobic006G131000 Sobic007G180600--Sobic006G131000 Sobic008G185500 Sobic008G185500 Sobic007G180600--Sobic008G185500 Sobic001G477700 Sobic001G477700 Sobic007G180600--Sobic001G477700 Sobic001G522100 Sobic001G522100 Sobic007G180600--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic007G180600--Sobic004G261600 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200
Octagon: transcription factors


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