Gene annotation
Transcriptome id Sobic.002G193300.3,Sobic.002G193300.2,Sobic.002G193300.1
Synonym
Functional annotation jmjC domain containing protein, expressed
UniProt A0A1B6QCE1 , A0A1W0W550 , A0A1B6QCE5
Pfam PF10497 PF02373
Panther DB PTHR12549 PTHR12549:SF15
NCBI CDD KOG1356; Putative transcription factor 5qNCA, contains JmjC domain
KEGG Orthology K15601; [histone H3]-dimethyl-L-lysine9 demethylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11950 : Transcription factor jumonji (jmjC) domain-containing protein
RAP-DB (Rice) LOC_Os03g31594.1,LOC_Os03g31594.2 : jmjC domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT64511 , KQJ90128 , KQJ90129
Barley HORVU5Hr1G060090.10 , HORVU5Hr1G060090.5 , HORVU5Hr1G060090.6 , HORVU5Hr1G060090.7 , HORVU5Hr1G060090.4 , HORVU5Hr1G060090.2 , HORVU5Hr1G060090.3 , HORVU5Hr1G060090.1 , HORVU5Hr1G060090.8 , HORVU5Hr1G060090.9
Wheat TraesCS5B02G200900 , TraesCS5D02G208700 , TraesCS5D02G208700 , TraesCS5D02G208700 , TraesCS5A02G202300 , TraesCS5A02G202300 , TraesCS5A02G202300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G249700 expressed protein -
2 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
3 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
4 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
5 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
6 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
7 Sobic.003G212900 zinc ion binding protein, putative, expressed -
8 Sobic.010G089400 TLD family protein, putative, expressed -
9 Sobic.003G362600 AT hook motif family protein, expressed K15200: general transcription factor 3C polypeptide 2
10 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
11 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
12 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
13 Sobic.009G020500 expressed protein -
14 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
15 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
16 Sobic.010G204400 phox domain-containing protein, putative, expressed -
17 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
18 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
19 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
20 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D


Gene co-expression network
sample Sobic002G193300 Sobic002G193300 Sobic009G249700 Sobic009G249700 Sobic002G193300--Sobic009G249700 Sobic010G086600 Sobic010G086600 Sobic002G193300--Sobic010G086600 Sobic009G119000 Sobic009G119000 Sobic002G193300--Sobic009G119000 Sobic003G093800 Sobic003G093800 Sobic002G193300--Sobic003G093800 Sobic004G353000 Sobic004G353000 Sobic002G193300--Sobic004G353000 Sobic007G042900 Sobic007G042900 Sobic002G193300--Sobic007G042900 Sobic003G212900 Sobic003G212900 Sobic002G193300--Sobic003G212900 Sobic010G089400 Sobic010G089400 Sobic002G193300--Sobic010G089400 Sobic003G362600 Sobic003G362600 Sobic002G193300--Sobic003G362600 Sobic007G218000 Sobic007G218000 Sobic009G249700--Sobic007G218000 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic010G169900 Sobic010G169900 Sobic009G249700--Sobic010G169900 Sobic003G444800 Sobic003G444800 Sobic009G249700--Sobic003G444800 Sobic009G249700--Sobic007G042900 Sobic010G086600--Sobic007G042900 Sobic010G086600--Sobic002G193300 Sobic001G542450 Sobic001G542450 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic007G180600 Sobic007G180600 Sobic010G086600--Sobic007G180600 Sobic002G153700 Sobic002G153700 Sobic009G119000--Sobic002G153700 Sobic003G059750 Sobic003G059750 Sobic009G119000--Sobic003G059750 Sobic002G071500 Sobic002G071500 Sobic009G119000--Sobic002G071500 Sobic010G065300 Sobic010G065300 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic003G416700 Sobic003G416700 Sobic009G119000--Sobic003G416700 Sobic004G048800 Sobic004G048800 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic003G093800--Sobic002G071500 Sobic003G093800--Sobic009G249700 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G212900--Sobic003G416700 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic005G100700 Sobic005G100700 Sobic010G089400--Sobic005G100700 Sobic010G021500 Sobic010G021500 Sobic010G089400--Sobic010G021500 Sobic006G096900 Sobic006G096900 Sobic010G089400--Sobic006G096900 Sobic002G211800 Sobic002G211800 Sobic010G089400--Sobic002G211800 Sobic010G089400--Sobic010G086600 Sobic010G226000 Sobic010G226000 Sobic010G089400--Sobic010G226000 Sobic010G089400--Sobic003G362600 Sobic004G311400 Sobic004G311400 Sobic010G089400--Sobic004G311400 Sobic007G159900 Sobic007G159900 Sobic010G089400--Sobic007G159900 Sobic009G165700 Sobic009G165700 Sobic003G362600--Sobic009G165700 Sobic001G251200 Sobic001G251200 Sobic003G362600--Sobic001G251200 Sobic003G166750 Sobic003G166750 Sobic003G362600--Sobic003G166750 Sobic003G362600--Sobic002G211800 Sobic008G087866 Sobic008G087866 Sobic003G362600--Sobic008G087866 Sobic004G023000 Sobic004G023000 Sobic003G362600--Sobic004G023000 Sobic003G362600--Sobic003G093800 Sobic004G091100 Sobic004G091100 Sobic003G362600--Sobic004G091100 Sobic001G441400 Sobic001G441400 Sobic003G362600--Sobic001G441400
Octagon: transcription factors


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