Gene annotation
Transcriptome id Sobic.002G245000.1
Synonym Sb02g028170, UPL5
Functional annotation HECT-domain domain containing protein, expressed
UniProt A0A1B6QD96 , A1E9T5
Pfam PF00632
Panther DB PTHR11254 PTHR11254:SF329
NCBI CDD KOG0940; Ubiquitin protein ligase RSP5/NEDD4
KEGG Orthology K10591; NEDD4, E3 ubiquitin-protein ligase NEDD4
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT4G12570 : ubiquitin protein ligase 5
RAP-DB (Rice) LOC_Os09g31090.2 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047427 , Zm00025a014194
Brachypodium KQJ90726 , PNT64824
Barley HORVU5Hr1G072720.7 , HORVU5Hr1G072720.5 , HORVU5Hr1G072720.3 , HORVU5Hr1G072720.2 , HORVU5Hr1G072720.9 , HORVU5Hr1G072720.8
Wheat TraesCS5A02G262600 , TraesCS5A02G262600 , TraesCS5A02G262600 , TraesCS7B02G496200 , TraesCS5B02G261000 , TraesCS5B02G261000 , TraesCS5D02G270200 , TraesCS5D02G270200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G212900 zinc ion binding protein, putative, expressed -
2 Sobic.007G000200 expressed protein -
3 Sobic.002G029100 GYF domain containing protein, putative, expressed -
4 Sobic.001G542450 - -
5 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
6 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
7 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
8 Sobic.009G020500 expressed protein -
9 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
10 Sobic.002G164200 PFT1, putative, expressed K15168: mediator of RNA polymerase II transcription subunit 25
11 Sobic.002G295500 expressed protein -
12 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
13 Sobic.006G224800 expressed protein -
14 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
15 Sobic.002G313900 potassium transporter, putative, expressed -
16 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
17 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
18 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
19 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
20 Sobic.003G310900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7


Gene co-expression network
sample Sobic002G245000 Sobic002G245000 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G029100 Sobic002G029100 Sobic002G245000--Sobic002G029100 Sobic001G542450 Sobic001G542450 Sobic002G245000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic002G245000--Sobic001G135500 Sobic003G062300 Sobic003G062300 Sobic002G245000--Sobic003G062300 Sobic008G002300 Sobic008G002300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic006G032300 Sobic006G032300 Sobic002G245000--Sobic006G032300 Sobic003G212900--Sobic001G135500 Sobic010G077500 Sobic010G077500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic001G042200 Sobic001G042200 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic008G058800 Sobic008G058800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic007G000200--Sobic008G002300 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic003G214600 Sobic003G214600 Sobic002G029100--Sobic003G214600 Sobic005G200800 Sobic005G200800 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G029100--Sobic002G164200 Sobic002G029100--Sobic008G002300 Sobic001G542450--Sobic008G002300 Sobic001G542450--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G542450--Sobic002G145800 Sobic003G217200 Sobic003G217200 Sobic001G542450--Sobic003G217200 Sobic001G542450--Sobic003G062300 Sobic001G542450--Sobic006G224800 Sobic001G542450--Sobic002G295500 Sobic001G461400 Sobic001G461400 Sobic001G542450--Sobic001G461400 Sobic006G166200 Sobic006G166200 Sobic001G542450--Sobic006G166200 Sobic001G135500--Sobic003G212900 Sobic001G135500--Sobic010G077500 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic002G390400 Sobic002G390400 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic003G062300--Sobic006G224800 Sobic003G062300--Sobic004G309900 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic003G062300--Sobic002G164200 Sobic003G062300--Sobic003G214600 Sobic003G062300--Sobic007G183300 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic008G002300--Sobic006G032300 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic009G020500--Sobic006G224800 Sobic009G119000 Sobic009G119000 Sobic009G020500--Sobic009G119000 Sobic009G020500--Sobic002G245000 Sobic009G020500--Sobic009G255600 Sobic009G020500--Sobic003G062300 Sobic009G126300 Sobic009G126300 Sobic009G020500--Sobic009G126300 Sobic009G020500--Sobic002G422100 Sobic009G020500--Sobic003G212900 Sobic002G344600 Sobic002G344600 Sobic009G020500--Sobic002G344600 Sobic002G335600 Sobic002G335600 Sobic006G032300--Sobic002G335600 Sobic008G088872 Sobic008G088872 Sobic006G032300--Sobic008G088872 Sobic004G053500 Sobic004G053500 Sobic006G032300--Sobic004G053500 Sobic007G018400 Sobic007G018400 Sobic006G032300--Sobic007G018400 Sobic001G273700 Sobic001G273700 Sobic006G032300--Sobic001G273700 Sobic002G042600 Sobic002G042600 Sobic006G032300--Sobic002G042600 Sobic001G191700 Sobic001G191700 Sobic006G032300--Sobic001G191700 Sobic009G131300 Sobic009G131300 Sobic006G032300--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic006G032300--Sobic002G429300
Octagon: transcription factors


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