Gene annotation
Transcriptome id Sobic.002G164200.1,Sobic.002G164200.2
Synonym Sb02g020790, PFT1
Functional annotation PFT1, putative, expressed
UniProt A0A1B6QBQ5 , A0A1B6QBR2
Pfam PF11265
Panther DB PTHR12433 PTHR12433:SF11
NCBI CDD -
KEGG Orthology K15168; mediator of RNA polymerase II transcription subunit 25
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G25540 : phytochrome and flowering time regulatory protein (PFT1)
RAP-DB (Rice) LOC_Os09g13610.1 : PFT1, putative, expressed
MaizeGDB (Corn) Zm00025a015947 , Zm00025a013708
Brachypodium KQJ89787
Barley HORVU5Hr1G054650.13 , HORVU5Hr1G054650.12 , HORVU5Hr1G054650.11 , HORVU5Hr1G054650.10 , HORVU5Hr1G054650.15 , HORVU5Hr1G054650.14 , HORVU5Hr1G054650.9 , HORVU5Hr1G054650.8 , HORVU5Hr1G054650.3 , HORVU5Hr1G054650.2 , HORVU5Hr1G054650.1 , HORVU5Hr1G054650.7 , HORVU5Hr1G054650.6 , HORVU5Hr1G054650.5 , HORVU5Hr1G054650.4
Wheat TraesCS5B02G177300 , TraesCS5B02G177300 , TraesCS5B02G177300 , TraesCS5A02G179400 , TraesCS5A02G179400 , TraesCS5A02G179400 , TraesCS5D02G184100 , TraesCS5D02G184100 , TraesCS5D02G184100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G183300 expressed protein -
2 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
3 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
4 Sobic.006G224800 expressed protein -
5 Sobic.001G051700 expressed protein -
6 Sobic.005G133800 NEF1, putative, expressed -
7 Sobic.002G029100 GYF domain containing protein, putative, expressed -
8 Sobic.007G000200 expressed protein -
9 Sobic.005G200800 homeobox domain containing protein, expressed -
10 Sobic.001G542450 - -
11 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
12 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
13 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
14 Sobic.003G416700 homeobox domain containing protein, expressed -
15 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
16 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
17 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
18 Sobic.002G295500 expressed protein -
19 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
20 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1


Gene co-expression network
sample Sobic002G164200 Sobic002G164200 Sobic007G183300 Sobic007G183300 Sobic002G164200--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic002G164200--Sobic003G062300 Sobic009G182600 Sobic009G182600 Sobic002G164200--Sobic009G182600 Sobic006G224800 Sobic006G224800 Sobic002G164200--Sobic006G224800 Sobic001G051700 Sobic001G051700 Sobic002G164200--Sobic001G051700 Sobic005G133800 Sobic005G133800 Sobic002G164200--Sobic005G133800 Sobic002G029100 Sobic002G029100 Sobic002G164200--Sobic002G029100 Sobic007G000200 Sobic007G000200 Sobic002G164200--Sobic007G000200 Sobic005G200800 Sobic005G200800 Sobic002G164200--Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic007G183300--Sobic001G051700 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic003G062300--Sobic005G220000 Sobic003G062300--Sobic001G051700 Sobic003G062300--Sobic002G164200 Sobic003G062300--Sobic003G214600 Sobic003G062300--Sobic007G183300 Sobic009G126300 Sobic009G126300 Sobic009G182600--Sobic009G126300 Sobic002G179400 Sobic002G179400 Sobic009G182600--Sobic002G179400 Sobic001G493700 Sobic001G493700 Sobic009G182600--Sobic001G493700 Sobic004G040500 Sobic004G040500 Sobic009G182600--Sobic004G040500 Sobic004G204100 Sobic004G204100 Sobic009G182600--Sobic004G204100 Sobic009G182600--Sobic002G164200 Sobic009G255600 Sobic009G255600 Sobic009G182600--Sobic009G255600 Sobic001G137000 Sobic001G137000 Sobic009G182600--Sobic001G137000 Sobic008G033900 Sobic008G033900 Sobic009G182600--Sobic008G033900 Sobic006G224800--Sobic003G062300 Sobic006G224800--Sobic003G416700 Sobic006G166200 Sobic006G166200 Sobic006G224800--Sobic006G166200 Sobic003G189600 Sobic003G189600 Sobic006G224800--Sobic003G189600 Sobic004G053500 Sobic004G053500 Sobic006G224800--Sobic004G053500 Sobic009G249700 Sobic009G249700 Sobic006G224800--Sobic009G249700 Sobic004G051200 Sobic004G051200 Sobic006G224800--Sobic004G051200 Sobic002G295500 Sobic002G295500 Sobic006G224800--Sobic002G295500 Sobic002G430300 Sobic002G430300 Sobic006G224800--Sobic002G430300 Sobic001G051700--Sobic003G416700 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic001G051700--Sobic006G224800 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic001G051700--Sobic003G062300 Sobic005G133800--Sobic006G166200 Sobic005G133800--Sobic004G053500 Sobic005G133800--Sobic002G430300 Sobic005G133800--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic005G133800--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic005G133800--Sobic003G405500 Sobic004G256500 Sobic004G256500 Sobic005G133800--Sobic004G256500 Sobic005G133800--Sobic003G062300 Sobic001G058200 Sobic001G058200 Sobic005G133800--Sobic001G058200 Sobic004G311400 Sobic004G311400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic002G029100--Sobic009G255600 Sobic002G029100--Sobic007G183300 Sobic002G245000 Sobic002G245000 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic006G032300 Sobic006G032300 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic007G000200--Sobic008G002300 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic007G000200--Sobic002G164200 Sobic003G089000 Sobic003G089000 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic005G200800--Sobic003G416700
Octagon: transcription factors


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