Gene annotation
Transcriptome id Sobic.004G311400.1,Sobic.004G311400.2,Sobic.004G311400.3
Synonym Sb04g034380
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A1Z5RQ38 , A0A194YSG1
Pfam PF13831 PF13832
Panther DB PTHR13793 PTHR13793:SF96
NCBI CDD KOG0954; PHD finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77800 : PHD finger family protein
RAP-DB (Rice) LOC_Os02g52960.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022244 , Zm00025a025078 , Zm00025a033081 , Zm00025a023521 , Zm00025a005559
Brachypodium KQK01722 , KQK01721 , KQK01720 , KQK01719
Barley HORVU2Hr1G039130.1 , HORVU2Hr1G039130.2 , HORVU2Hr1G039130.3 , HORVU2Hr1G039130.4
Wheat TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6D02G308100 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6B02G360000 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200 , TraesCS6A02G329200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G029100 GYF domain containing protein, putative, expressed -
2 Sobic.008G096000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
4 Sobic.005G200800 homeobox domain containing protein, expressed -
5 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
6 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
7 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
8 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
9 Sobic.010G089400 TLD family protein, putative, expressed -
10 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
11 Sobic.003G051700 universal stress protein domain containing protein, putative, expressed -
12 Sobic.008G145800 nucleobase-ascorbate transporter, putative, expressed -
13 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
14 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
15 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
16 Sobic.003G212900 zinc ion binding protein, putative, expressed -
17 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
18 Sobic.006G032300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
19 Sobic.002G165800 - -
20 Sobic.008G115000 Fibronectin type III domain containing protein, expressed -


Gene co-expression network
sample Sobic004G311400 Sobic004G311400 Sobic002G029100 Sobic002G029100 Sobic004G311400--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic004G311400--Sobic008G096000 Sobic003G038100 Sobic003G038100 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic008G096000--Sobic004G311400 Sobic008G096000--Sobic002G029100 Sobic008G088200 Sobic008G088200 Sobic008G096000--Sobic008G088200 Sobic004G317300 Sobic004G317300 Sobic008G096000--Sobic004G317300 Sobic008G145800 Sobic008G145800 Sobic008G096000--Sobic008G145800 Sobic008G096000--Sobic003G038100 Sobic001G041400 Sobic001G041400 Sobic008G096000--Sobic001G041400 Sobic008G057000 Sobic008G057000 Sobic008G096000--Sobic008G057000 Sobic006G019300 Sobic006G019300 Sobic008G096000--Sobic006G019300 Sobic006G161000 Sobic006G161000 Sobic003G038100--Sobic006G161000 Sobic003G038100--Sobic004G311400 Sobic004G088200 Sobic004G088200 Sobic003G038100--Sobic004G088200 Sobic003G438900 Sobic003G438900 Sobic003G038100--Sobic003G438900 Sobic003G394300 Sobic003G394300 Sobic003G038100--Sobic003G394300 Sobic003G194500 Sobic003G194500 Sobic003G038100--Sobic003G194500 Sobic003G038100--Sobic005G207500 Sobic003G038100--Sobic002G029100 Sobic004G237100 Sobic004G237100 Sobic003G038100--Sobic004G237100 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic005G200800--Sobic003G416700 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic002G353600 Sobic002G353600 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200 Sobic002G153700--Sobic002G071500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G245000--Sobic002G029100 Sobic001G542450 Sobic001G542450 Sobic002G245000--Sobic001G542450 Sobic001G135500 Sobic001G135500 Sobic002G245000--Sobic001G135500 Sobic003G062300 Sobic003G062300 Sobic002G245000--Sobic003G062300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic006G032300 Sobic006G032300 Sobic002G245000--Sobic006G032300 Sobic003G214600--Sobic005G200800 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic005G100700 Sobic005G100700 Sobic010G089400--Sobic005G100700 Sobic010G021500 Sobic010G021500 Sobic010G089400--Sobic010G021500 Sobic006G096900 Sobic006G096900 Sobic010G089400--Sobic006G096900 Sobic002G211800 Sobic002G211800 Sobic010G089400--Sobic002G211800 Sobic010G086600 Sobic010G086600 Sobic010G089400--Sobic010G086600 Sobic010G226000 Sobic010G226000 Sobic010G089400--Sobic010G226000 Sobic003G362600 Sobic003G362600 Sobic010G089400--Sobic003G362600 Sobic010G089400--Sobic004G311400 Sobic007G159900 Sobic007G159900 Sobic010G089400--Sobic007G159900
Octagon: transcription factors


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