Gene annotation
Transcriptome id Sobic.008G096000.1,Sobic.008G096000.2
Synonym auxin response factor, HSS, SbARF18, Sb08g014320, ARF2, ARF1-BP, ORE14
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt C5YNM8 , A0A1B6PD38
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT5G62000 : auxin response factor 2
RAP-DB (Rice) LOC_Os12g29520.3,LOC_Os12g29520.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a039226 , Zm00025a054125 , Zm00025a024877 , Zm00025a026191
Brachypodium KQJ88394 , KQJ88395 , KQK11324 , KQJ86742 , KQJ86741 , KQJ88393 , KQJ88396
Barley HORVU3Hr1G097200.9 , HORVU3Hr1G097200.8 , HORVU3Hr1G097200.7 , HORVU3Hr1G097200.6 , HORVU3Hr1G097200.5 , HORVU3Hr1G097200.4 , HORVU3Hr1G097200.3 , HORVU3Hr1G097200.2 , HORVU3Hr1G097200.1 , HORVU3Hr1G097200.12 , HORVU3Hr1G097200.11 , HORVU3Hr1G097200.10
Wheat TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3B02G486000 , TraesCS3B02G486000 , TraesCS3A02G449300 , TraesCS3A02G449300 , TraesCS3A02G449300 , TraesCS3B02G475800
Populus -


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cDNA sequences
Sobic.008G096000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
2 Sobic.002G029100 GYF domain containing protein, putative, expressed -
3 Sobic.008G088200 DnaK family protein, putative, expressed -
4 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
5 Sobic.008G145800 nucleobase-ascorbate transporter, putative, expressed -
6 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
7 Sobic.001G041400 PAPA-1-like conserved region family protein, expressed -
8 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
9 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
10 Sobic.001G033400 protein kinase domain containing protein, expressed -
11 Sobic.010G089400 TLD family protein, putative, expressed -
12 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
13 Sobic.005G200800 homeobox domain containing protein, expressed -
14 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
15 Sobic.006G200500 expressed protein -
16 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
17 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
18 Sobic.001G480550 - -
19 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
20 Sobic.009G060300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase


Gene co-expression network
sample Sobic008G096000 Sobic008G096000 Sobic004G311400 Sobic004G311400 Sobic008G096000--Sobic004G311400 Sobic002G029100 Sobic002G029100 Sobic008G096000--Sobic002G029100 Sobic008G088200 Sobic008G088200 Sobic008G096000--Sobic008G088200 Sobic004G317300 Sobic004G317300 Sobic008G096000--Sobic004G317300 Sobic008G145800 Sobic008G145800 Sobic008G096000--Sobic008G145800 Sobic003G038100 Sobic003G038100 Sobic008G096000--Sobic003G038100 Sobic001G041400 Sobic001G041400 Sobic008G096000--Sobic001G041400 Sobic008G057000 Sobic008G057000 Sobic008G096000--Sobic008G057000 Sobic006G019300 Sobic006G019300 Sobic008G096000--Sobic006G019300 Sobic004G311400--Sobic002G029100 Sobic004G311400--Sobic008G096000 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic001G208700 Sobic001G208700 Sobic008G088200--Sobic001G208700 Sobic008G088200--Sobic008G145800 Sobic008G088200--Sobic003G038100 Sobic008G088200--Sobic004G311400 Sobic008G088200--Sobic008G096000 Sobic006G200500 Sobic006G200500 Sobic008G088200--Sobic006G200500 Sobic003G159500 Sobic003G159500 Sobic008G088200--Sobic003G159500 Sobic008G088200--Sobic002G029100 Sobic004G285400 Sobic004G285400 Sobic008G088200--Sobic004G285400 Sobic005G100700 Sobic005G100700 Sobic004G317300--Sobic005G100700 Sobic004G317300--Sobic002G029100 Sobic004G317300--Sobic003G214600 Sobic004G317300--Sobic006G019300 Sobic003G388100 Sobic003G388100 Sobic004G317300--Sobic003G388100 Sobic001G277900 Sobic001G277900 Sobic004G317300--Sobic001G277900 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic003G360400 Sobic003G360400 Sobic004G317300--Sobic003G360400 Sobic001G456900 Sobic001G456900 Sobic008G145800--Sobic001G456900 Sobic007G159900 Sobic007G159900 Sobic008G145800--Sobic007G159900 Sobic004G088200 Sobic004G088200 Sobic008G145800--Sobic004G088200 Sobic006G056700 Sobic006G056700 Sobic008G145800--Sobic006G056700 Sobic008G145800--Sobic004G311400 Sobic008G145800--Sobic005G100700 Sobic008G145800--Sobic008G088200 Sobic004G129300 Sobic004G129300 Sobic008G145800--Sobic004G129300 Sobic010G237900 Sobic010G237900 Sobic008G145800--Sobic010G237900 Sobic006G161000 Sobic006G161000 Sobic003G038100--Sobic006G161000 Sobic003G038100--Sobic004G311400 Sobic003G038100--Sobic004G088200 Sobic003G438900 Sobic003G438900 Sobic003G038100--Sobic003G438900 Sobic003G394300 Sobic003G394300 Sobic003G038100--Sobic003G394300 Sobic003G194500 Sobic003G194500 Sobic003G038100--Sobic003G194500 Sobic003G038100--Sobic005G207500 Sobic003G038100--Sobic002G029100 Sobic004G237100 Sobic004G237100 Sobic003G038100--Sobic004G237100 Sobic007G078300 Sobic007G078300 Sobic001G041400--Sobic007G078300 Sobic002G341100 Sobic002G341100 Sobic001G041400--Sobic002G341100 Sobic001G033400 Sobic001G033400 Sobic001G041400--Sobic001G033400 Sobic001G042800 Sobic001G042800 Sobic001G041400--Sobic001G042800 Sobic003G022200 Sobic003G022200 Sobic001G041400--Sobic003G022200 Sobic004G329800 Sobic004G329800 Sobic001G041400--Sobic004G329800 Sobic003G035500 Sobic003G035500 Sobic001G041400--Sobic003G035500 Sobic010G152200 Sobic010G152200 Sobic001G041400--Sobic010G152200 Sobic002G067800 Sobic002G067800 Sobic001G041400--Sobic002G067800 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic008G057000--Sobic005G200800 Sobic001G346900 Sobic001G346900 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic008G057000--Sobic007G183300 Sobic006G019300--Sobic005G100700 Sobic002G374300 Sobic002G374300 Sobic006G019300--Sobic002G374300 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic004G243600 Sobic004G243600 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic006G019300--Sobic004G317300 Sobic006G019300--Sobic005G200800 Sobic006G019300--Sobic003G360400
Octagon: transcription factors


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