Gene annotation
Transcriptome id Sobic.006G200500.1,Sobic.006G200500.2
Synonym Sb06g027240
Functional annotation expressed protein
UniProt A0A1Z5REV7 , C5YF33
Pfam PF05542
Panther DB PTHR31808 PTHR31808:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32160 : Protein of unknown function (DUF760)
RAP-DB (Rice) LOC_Os04g50860.1 : expressed protein
MaizeGDB (Corn) Zm00025a009970 , Zm00025a056911
Brachypodium KQJ84336
Barley HORVU2Hr1G102880.5 , HORVU2Hr1G102880.4 , HORVU2Hr1G102880.1 , HORVU2Hr1G102880.3 , HORVU2Hr1G102880.2
Wheat TraesCS2D02G443500
Populus -


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cDNA sequences
Sobic.006G200500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G088200 DnaK family protein, putative, expressed -
2 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
3 Sobic.002G029100 GYF domain containing protein, putative, expressed -
4 Sobic.008G096000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
5 Sobic.006G256300 leucyl-tRNA synthetase, cytoplasmic, putative, expressed K01869: LARS, leucyl-tRNA synthetase
6 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
7 Sobic.001G321000 oxidoreductase, putative, expressed -
8 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
9 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
10 Sobic.006G015500 ZOS9-03 - C2H2 zinc finger protein, expressed -
11 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
12 Sobic.009G122375 - -
13 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
14 Sobic.009G060300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
15 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
16 Sobic.002G382600 expressed protein -
17 Sobic.001G039900 KH domain containing protein, putative, expressed K14945: protein quaking
18 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
19 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
20 Sobic.003G338000 non-green plastid inner envelope membrane protein, putative, expressed -


Gene co-expression network
sample Sobic006G200500 Sobic006G200500 Sobic008G088200 Sobic008G088200 Sobic006G200500--Sobic008G088200 Sobic004G311400 Sobic004G311400 Sobic006G200500--Sobic004G311400 Sobic002G029100 Sobic002G029100 Sobic006G200500--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic006G200500--Sobic008G096000 Sobic006G256300 Sobic006G256300 Sobic006G200500--Sobic006G256300 Sobic007G018700 Sobic007G018700 Sobic006G200500--Sobic007G018700 Sobic001G321000 Sobic001G321000 Sobic006G200500--Sobic001G321000 Sobic006G061100 Sobic006G061100 Sobic006G200500--Sobic006G061100 Sobic003G038100 Sobic003G038100 Sobic006G200500--Sobic003G038100 Sobic001G208700 Sobic001G208700 Sobic008G088200--Sobic001G208700 Sobic008G145800 Sobic008G145800 Sobic008G088200--Sobic008G145800 Sobic008G088200--Sobic003G038100 Sobic008G088200--Sobic004G311400 Sobic008G088200--Sobic008G096000 Sobic008G088200--Sobic006G200500 Sobic003G159500 Sobic003G159500 Sobic008G088200--Sobic003G159500 Sobic008G088200--Sobic002G029100 Sobic004G285400 Sobic004G285400 Sobic008G088200--Sobic004G285400 Sobic004G311400--Sobic002G029100 Sobic004G311400--Sobic008G096000 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic002G029100--Sobic004G311400 Sobic002G029100--Sobic003G214600 Sobic002G029100--Sobic005G200800 Sobic009G255600 Sobic009G255600 Sobic002G029100--Sobic009G255600 Sobic007G183300 Sobic007G183300 Sobic002G029100--Sobic007G183300 Sobic002G029100--Sobic002G245000 Sobic010G186600 Sobic010G186600 Sobic002G029100--Sobic010G186600 Sobic002G164200 Sobic002G164200 Sobic002G029100--Sobic002G164200 Sobic008G002300 Sobic008G002300 Sobic002G029100--Sobic008G002300 Sobic008G096000--Sobic004G311400 Sobic008G096000--Sobic002G029100 Sobic008G096000--Sobic008G088200 Sobic004G317300 Sobic004G317300 Sobic008G096000--Sobic004G317300 Sobic008G096000--Sobic008G145800 Sobic008G096000--Sobic003G038100 Sobic001G041400 Sobic001G041400 Sobic008G096000--Sobic001G041400 Sobic008G057000 Sobic008G057000 Sobic008G096000--Sobic008G057000 Sobic006G019300 Sobic006G019300 Sobic008G096000--Sobic006G019300 Sobic004G036300 Sobic004G036300 Sobic006G256300--Sobic004G036300 Sobic004G237400 Sobic004G237400 Sobic006G256300--Sobic004G237400 Sobic001G310700 Sobic001G310700 Sobic006G256300--Sobic001G310700 Sobic009G137700 Sobic009G137700 Sobic006G256300--Sobic009G137700 Sobic002G159200 Sobic002G159200 Sobic006G256300--Sobic002G159200 Sobic002G382600 Sobic002G382600 Sobic006G256300--Sobic002G382600 Sobic007G046200 Sobic007G046200 Sobic006G256300--Sobic007G046200 Sobic006G256300--Sobic006G200500 Sobic002G045400 Sobic002G045400 Sobic006G256300--Sobic002G045400 Sobic008G156200 Sobic008G156200 Sobic007G018700--Sobic008G156200 Sobic005G050600 Sobic005G050600 Sobic007G018700--Sobic005G050600 Sobic002G390400 Sobic002G390400 Sobic007G018700--Sobic002G390400 Sobic010G207400 Sobic010G207400 Sobic007G018700--Sobic010G207400 Sobic005G072400 Sobic005G072400 Sobic007G018700--Sobic005G072400 Sobic007G018700--Sobic006G061100 Sobic003G412200 Sobic003G412200 Sobic007G018700--Sobic003G412200 Sobic004G200400 Sobic004G200400 Sobic007G018700--Sobic004G200400 Sobic005G131800 Sobic005G131800 Sobic007G018700--Sobic005G131800 Sobic001G279100 Sobic001G279100 Sobic001G321000--Sobic001G279100 Sobic001G321000--Sobic004G237400 Sobic002G058500 Sobic002G058500 Sobic001G321000--Sobic002G058500 Sobic008G186200 Sobic008G186200 Sobic001G321000--Sobic008G186200 Sobic003G226200 Sobic003G226200 Sobic001G321000--Sobic003G226200 Sobic002G189400 Sobic002G189400 Sobic001G321000--Sobic002G189400 Sobic001G408200 Sobic001G408200 Sobic001G321000--Sobic001G408200 Sobic002G415900 Sobic002G415900 Sobic001G321000--Sobic002G415900 Sobic008G012400 Sobic008G012400 Sobic001G321000--Sobic008G012400 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic009G113100 Sobic009G113100 Sobic006G061100--Sobic009G113100 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic006G161000 Sobic006G161000 Sobic003G038100--Sobic006G161000 Sobic003G038100--Sobic004G311400 Sobic004G088200 Sobic004G088200 Sobic003G038100--Sobic004G088200 Sobic003G438900 Sobic003G438900 Sobic003G038100--Sobic003G438900 Sobic003G394300 Sobic003G394300 Sobic003G038100--Sobic003G394300 Sobic003G194500 Sobic003G194500 Sobic003G038100--Sobic003G194500 Sobic003G038100--Sobic005G207500 Sobic003G038100--Sobic002G029100 Sobic004G237100 Sobic004G237100 Sobic003G038100--Sobic004G237100
Octagon: transcription factors


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