Gene annotation
Transcriptome id Sobic.006G256300.2,Sobic.006G256300.4,Sobic.006G256300.6,Sobic.006G256300.3,Sobic.006G256300.5
Synonym Sb06g031980
Functional annotation leucyl-tRNA synthetase, cytoplasmic, putative, expressed
UniProt C5Y9Z7
Pfam PF01406 PF08264 PF00133
Panther DB PTHR11946 PTHR11946:SF51
NCBI CDD -
KEGG Orthology K01869; LARS, leucyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT1G09620 : ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
RAP-DB (Rice) LOC_Os09g32650.1 : leucyl-tRNA synthetase, cytoplasmic, putative, expressed
MaizeGDB (Corn) Zm00025a009401 , Zm00025a013695
Brachypodium KQK03525 , KQJ97799
Barley HORVU2Hr1G026750.4 , HORVU2Hr1G026750.5 , HORVU2Hr1G026750.6 , HORVU2Hr1G026750.7 , HORVU2Hr1G026750.8 , HORVU2Hr1G026750.9 , HORVU2Hr1G026750.10 , HORVU3Hr1G032730.2 , HORVU3Hr1G032730.3 , HORVU3Hr1G032730.1 , HORVU3Hr1G032730.4 , HORVU3Hr1G032730.5
Wheat TraesCS3B02G194400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G036300 marker Xucw84, putative, expressed -
2 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
3 Sobic.001G310700 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
4 Sobic.009G137700 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
5 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
6 Sobic.002G382600 expressed protein -
7 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
8 Sobic.006G200500 expressed protein -
9 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.007G041300 expressed protein -
11 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
12 Sobic.001G321000 oxidoreductase, putative, expressed -
13 Sobic.001G416700 arginine biosynthesis bifunctional protein argJ 1, putative, expressed K00620: glutamate N-acetyltransferase / amino-acid N-acetyltransferase
14 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
15 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
16 Sobic.004G346100 expressed protein -
17 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
18 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.004G186000 salt tolerant protein, putative, expressed -
20 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3


Gene co-expression network
sample Sobic006G256300 Sobic006G256300 Sobic004G036300 Sobic004G036300 Sobic006G256300--Sobic004G036300 Sobic004G237400 Sobic004G237400 Sobic006G256300--Sobic004G237400 Sobic001G310700 Sobic001G310700 Sobic006G256300--Sobic001G310700 Sobic009G137700 Sobic009G137700 Sobic006G256300--Sobic009G137700 Sobic002G159200 Sobic002G159200 Sobic006G256300--Sobic002G159200 Sobic002G382600 Sobic002G382600 Sobic006G256300--Sobic002G382600 Sobic007G046200 Sobic007G046200 Sobic006G256300--Sobic007G046200 Sobic006G200500 Sobic006G200500 Sobic006G256300--Sobic006G200500 Sobic002G045400 Sobic002G045400 Sobic006G256300--Sobic002G045400 Sobic007G041300 Sobic007G041300 Sobic004G036300--Sobic007G041300 Sobic004G036300--Sobic002G159200 Sobic004G346100 Sobic004G346100 Sobic004G036300--Sobic004G346100 Sobic009G036200 Sobic009G036200 Sobic004G036300--Sobic009G036200 Sobic003G442000 Sobic003G442000 Sobic004G036300--Sobic003G442000 Sobic004G036300--Sobic009G137700 Sobic004G088200 Sobic004G088200 Sobic004G036300--Sobic004G088200 Sobic003G114500 Sobic003G114500 Sobic004G036300--Sobic003G114500 Sobic004G036300--Sobic007G046200 Sobic002G105200 Sobic002G105200 Sobic004G237400--Sobic002G105200 Sobic009G113000 Sobic009G113000 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic006G004500 Sobic006G004500 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic008G160500 Sobic008G160500 Sobic001G310700--Sobic008G160500 Sobic002G400400 Sobic002G400400 Sobic001G310700--Sobic002G400400 Sobic001G033400 Sobic001G033400 Sobic001G310700--Sobic001G033400 Sobic002G276900 Sobic002G276900 Sobic001G310700--Sobic002G276900 Sobic001G310700--Sobic006G256300 Sobic001G279100 Sobic001G279100 Sobic001G310700--Sobic001G279100 Sobic001G310700--Sobic007G046200 Sobic004G250900 Sobic004G250900 Sobic001G310700--Sobic004G250900 Sobic007G018200 Sobic007G018200 Sobic001G310700--Sobic007G018200 Sobic009G137700--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic009G137700--Sobic010G095700 Sobic007G111100 Sobic007G111100 Sobic009G137700--Sobic007G111100 Sobic009G258400 Sobic009G258400 Sobic009G137700--Sobic009G258400 Sobic002G262700 Sobic002G262700 Sobic009G137700--Sobic002G262700 Sobic009G137700--Sobic004G036300 Sobic007G102700 Sobic007G102700 Sobic009G137700--Sobic007G102700 Sobic009G137700--Sobic009G036200 Sobic004G068500 Sobic004G068500 Sobic009G137700--Sobic004G068500 Sobic007G043500 Sobic007G043500 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G067800 Sobic002G067800 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic005G059100 Sobic005G059100 Sobic002G159200--Sobic005G059100 Sobic001G405300 Sobic001G405300 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic003G355000 Sobic003G355000 Sobic002G159200--Sobic003G355000 Sobic007G026000 Sobic007G026000 Sobic002G159200--Sobic007G026000 Sobic002G382600--Sobic002G105200 Sobic010G167900 Sobic010G167900 Sobic002G382600--Sobic010G167900 Sobic002G382600--Sobic009G113000 Sobic002G382600--Sobic004G237400 Sobic010G264200 Sobic010G264200 Sobic002G382600--Sobic010G264200 Sobic004G331100 Sobic004G331100 Sobic002G382600--Sobic004G331100 Sobic002G382600--Sobic001G279100 Sobic001G109800 Sobic001G109800 Sobic002G382600--Sobic001G109800 Sobic001G436900 Sobic001G436900 Sobic002G382600--Sobic001G436900 Sobic001G517500 Sobic001G517500 Sobic007G046200--Sobic001G517500 Sobic007G046200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic007G046200--Sobic002G034600 Sobic007G119200 Sobic007G119200 Sobic007G046200--Sobic007G119200 Sobic007G046200--Sobic007G111100 Sobic007G046200--Sobic003G355000 Sobic010G202600 Sobic010G202600 Sobic007G046200--Sobic010G202600 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000 Sobic008G088200 Sobic008G088200 Sobic006G200500--Sobic008G088200 Sobic004G311400 Sobic004G311400 Sobic006G200500--Sobic004G311400 Sobic002G029100 Sobic002G029100 Sobic006G200500--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic006G200500--Sobic008G096000 Sobic006G200500--Sobic006G256300 Sobic007G018700 Sobic007G018700 Sobic006G200500--Sobic007G018700 Sobic001G321000 Sobic001G321000 Sobic006G200500--Sobic001G321000 Sobic006G061100 Sobic006G061100 Sobic006G200500--Sobic006G061100 Sobic003G038100 Sobic003G038100 Sobic006G200500--Sobic003G038100 Sobic008G073000 Sobic008G073000 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic003G433500 Sobic003G433500 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic008G101800 Sobic008G101800 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic002G045400--Sobic010G202600 Sobic005G030300 Sobic005G030300 Sobic002G045400--Sobic005G030300
Octagon: transcription factors


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