Gene annotation
Transcriptome id Sobic.009G137700.1
Synonym IPP1, Sb09g020370
Functional annotation hydrolase, NUDIX family, domain containing protein, expressed
UniProt A0A1Z5R2L3
Pfam PF00293
Panther DB PTHR10885 PTHR10885:SF4
NCBI CDD KOG0142; Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase
KEGG Orthology K01823; idi, isopentenyl-diphosphate Delta-isomerase
Gene Ontology GO:0016787; hydrolase activity GO:0008299isoprenoid biosynthetic process GO:0004452isopentenyl-diphosphate delta-isomerase activity


Orthologs (automatic annotation)
TAIR AT5G16440 : isopentenyl diphosphate isomerase 1
RAP-DB (Rice) LOC_Os05g34180.1 : hydrolase, NUDIX family, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037430 , Zm00025a043703 , Zm00025a048323
Brachypodium KQK06256 , KQK15857
Barley HORVU1Hr1G064860.3 , HORVU1Hr1G064860.2 , HORVU1Hr1G064860.1 , HORVU1Hr1G064860.7 , HORVU1Hr1G064860.6 , HORVU1Hr1G064860.5 , HORVU1Hr1G064860.4
Wheat TraesCS1A02G259000 , TraesCS2D02G220000 , TraesCS2A02G214200 , TraesCS2A02G214200 , TraesCS2B02G239200 , TraesCS2B02G239200 , TraesCS1D02G258900 , TraesCS1B02G269500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G041300 expressed protein -
2 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
3 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
4 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
5 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
6 Sobic.004G036300 marker Xucw84, putative, expressed -
7 Sobic.007G102700 - -
8 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
9 Sobic.004G068500 CUE domain containing protein, expressed -
10 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
11 Sobic.007G018200 RNA recognition motif containing protein, putative, expressed -
12 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
13 Sobic.002G408600 expressed protein -
14 Sobic.004G067400 expressed protein -
15 Sobic.006G120800 transglutaminase, putative, expressed -
16 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
17 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
18 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
19 Sobic.001G106100 expressed protein -
20 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase


Gene co-expression network
sample Sobic009G137700 Sobic009G137700 Sobic007G041300 Sobic007G041300 Sobic009G137700--Sobic007G041300 Sobic010G095700 Sobic010G095700 Sobic009G137700--Sobic010G095700 Sobic007G111100 Sobic007G111100 Sobic009G137700--Sobic007G111100 Sobic009G258400 Sobic009G258400 Sobic009G137700--Sobic009G258400 Sobic002G262700 Sobic002G262700 Sobic009G137700--Sobic002G262700 Sobic004G036300 Sobic004G036300 Sobic009G137700--Sobic004G036300 Sobic007G102700 Sobic007G102700 Sobic009G137700--Sobic007G102700 Sobic009G036200 Sobic009G036200 Sobic009G137700--Sobic009G036200 Sobic004G068500 Sobic004G068500 Sobic009G137700--Sobic004G068500 Sobic007G041300--Sobic007G102700 Sobic001G473600 Sobic001G473600 Sobic007G041300--Sobic001G473600 Sobic007G191700 Sobic007G191700 Sobic007G041300--Sobic007G191700 Sobic007G041300--Sobic004G036300 Sobic007G041300--Sobic009G137700 Sobic003G438900 Sobic003G438900 Sobic007G041300--Sobic003G438900 Sobic004G088200 Sobic004G088200 Sobic007G041300--Sobic004G088200 Sobic005G079800 Sobic005G079800 Sobic007G041300--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic007G041300--Sobic003G427100 Sobic007G056500 Sobic007G056500 Sobic010G095700--Sobic007G056500 Sobic010G095700--Sobic001G473600 Sobic006G261100 Sobic006G261100 Sobic010G095700--Sobic006G261100 Sobic001G390500 Sobic001G390500 Sobic010G095700--Sobic001G390500 Sobic002G034600 Sobic002G034600 Sobic010G095700--Sobic002G034600 Sobic001G497900 Sobic001G497900 Sobic010G095700--Sobic001G497900 Sobic010G095700--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic010G095700--Sobic003G355000 Sobic001G469800 Sobic001G469800 Sobic010G095700--Sobic001G469800 Sobic010G202600 Sobic010G202600 Sobic007G111100--Sobic010G202600 Sobic007G111100--Sobic002G262700 Sobic006G267300 Sobic006G267300 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic003G205501 Sobic003G205501 Sobic007G111100--Sobic003G205501 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic002G262700--Sobic007G111100 Sobic002G262700--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic002G262700--Sobic007G046200 Sobic002G262700--Sobic004G068500 Sobic008G127400 Sobic008G127400 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic004G036300--Sobic007G041300 Sobic002G159200 Sobic002G159200 Sobic004G036300--Sobic002G159200 Sobic004G346100 Sobic004G346100 Sobic004G036300--Sobic004G346100 Sobic004G036300--Sobic009G036200 Sobic003G442000 Sobic003G442000 Sobic004G036300--Sobic003G442000 Sobic004G036300--Sobic009G137700 Sobic004G036300--Sobic004G088200 Sobic003G114500 Sobic003G114500 Sobic004G036300--Sobic003G114500 Sobic004G036300--Sobic007G046200 Sobic007G102700--Sobic007G041300 Sobic004G156800 Sobic004G156800 Sobic007G102700--Sobic004G156800 Sobic010G237900 Sobic010G237900 Sobic007G102700--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic007G102700--Sobic004G129300 Sobic007G102700--Sobic007G191700 Sobic001G244300 Sobic001G244300 Sobic007G102700--Sobic001G244300 Sobic007G102700--Sobic001G473600 Sobic010G186600 Sobic010G186600 Sobic007G102700--Sobic010G186600 Sobic007G102700--Sobic001G114500 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic009G036200--Sobic004G346100 Sobic001G042200 Sobic001G042200 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic004G068500--Sobic007G111100 Sobic004G068500--Sobic002G262700 Sobic001G005600 Sobic001G005600 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic004G068500--Sobic007G046200 Sobic004G068500--Sobic001G042200 Sobic007G042900 Sobic007G042900 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500
Octagon: transcription factors


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