Gene annotation
Transcriptome id Sobic.002G408600.2,Sobic.002G408600.3,Sobic.002G408600.1
Synonym Sb02g042240
Functional annotation expressed protein
UniProt A0A1B6QG40
Pfam -
Panther DB PTHR37886
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05100 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os07g47150.1,LOC_Os07g47150.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK14755
Barley HORVU2Hr1G020730.4 , HORVU2Hr1G020730.1 , HORVU2Hr1G020730.3
Wheat TraesCS2D02G121300 , TraesCS2B02G140200 , TraesCS2A02G119500
Populus -


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cDNA sequences
Sobic.002G408600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
2 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
3 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
4 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
5 Sobic.009G126800 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
6 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
7 Sobic.001G335500 RNA-binding protein-like, putative, expressed -
8 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
9 Sobic.004G067400 expressed protein -
10 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
11 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
13 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
14 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
15 Sobic.007G197400 pentatricopeptide, putative, expressed -
16 Sobic.009G137700 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
17 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
18 Sobic.005G009200 expressed protein -
19 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
20 Sobic.003G253400 expressed protein -


Gene co-expression network
sample Sobic002G408600 Sobic002G408600 Sobic010G278600 Sobic010G278600 Sobic002G408600--Sobic010G278600 Sobic009G074700 Sobic009G074700 Sobic002G408600--Sobic009G074700 Sobic001G334100 Sobic001G334100 Sobic002G408600--Sobic001G334100 Sobic005G199200 Sobic005G199200 Sobic002G408600--Sobic005G199200 Sobic009G126800 Sobic009G126800 Sobic002G408600--Sobic009G126800 Sobic002G262700 Sobic002G262700 Sobic002G408600--Sobic002G262700 Sobic001G335500 Sobic001G335500 Sobic002G408600--Sobic001G335500 Sobic003G184400 Sobic003G184400 Sobic002G408600--Sobic003G184400 Sobic004G067400 Sobic004G067400 Sobic002G408600--Sobic004G067400 Sobic009G040800 Sobic009G040800 Sobic010G278600--Sobic009G040800 Sobic010G278600--Sobic009G074700 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic001G246500 Sobic001G246500 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic001G334100--Sobic003G184400 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic001G334100--Sobic006G180700 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic005G199200--Sobic010G278600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic002G253600 Sobic002G253600 Sobic009G126800--Sobic002G253600 Sobic002G362300 Sobic002G362300 Sobic009G126800--Sobic002G362300 Sobic009G126800--Sobic002G408600 Sobic008G165100 Sobic008G165100 Sobic009G126800--Sobic008G165100 Sobic003G433500 Sobic003G433500 Sobic009G126800--Sobic003G433500 Sobic005G009200 Sobic005G009200 Sobic009G126800--Sobic005G009200 Sobic009G126800--Sobic010G202600 Sobic001G230500 Sobic001G230500 Sobic009G126800--Sobic001G230500 Sobic010G235800 Sobic010G235800 Sobic009G126800--Sobic010G235800 Sobic007G111100 Sobic007G111100 Sobic002G262700--Sobic007G111100 Sobic002G262700--Sobic010G202600 Sobic002G262700--Sobic009G074700 Sobic007G119200 Sobic007G119200 Sobic002G262700--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic002G262700--Sobic007G046200 Sobic004G068500 Sobic004G068500 Sobic002G262700--Sobic004G068500 Sobic008G127400 Sobic008G127400 Sobic002G262700--Sobic008G127400 Sobic007G026000 Sobic007G026000 Sobic002G262700--Sobic007G026000 Sobic010G055800 Sobic010G055800 Sobic002G262700--Sobic010G055800 Sobic001G335500--Sobic004G067400 Sobic006G120800 Sobic006G120800 Sobic001G335500--Sobic006G120800 Sobic003G253400 Sobic003G253400 Sobic001G335500--Sobic003G253400 Sobic007G183300 Sobic007G183300 Sobic001G335500--Sobic007G183300 Sobic009G258400 Sobic009G258400 Sobic001G335500--Sobic009G258400 Sobic004G129600 Sobic004G129600 Sobic001G335500--Sobic004G129600 Sobic001G335500--Sobic002G408600 Sobic010G279900 Sobic010G279900 Sobic001G335500--Sobic010G279900 Sobic005G115500 Sobic005G115500 Sobic001G335500--Sobic005G115500 Sobic003G184400--Sobic005G199200 Sobic003G184400--Sobic001G334100 Sobic003G184400--Sobic002G142600 Sobic003G184400--Sobic009G074700 Sobic004G036700 Sobic004G036700 Sobic003G184400--Sobic004G036700 Sobic003G184400--Sobic001G090300 Sobic002G005000 Sobic002G005000 Sobic003G184400--Sobic002G005000 Sobic005G137700 Sobic005G137700 Sobic003G184400--Sobic005G137700 Sobic003G184400--Sobic002G408600 Sobic004G067400--Sobic001G335500 Sobic004G067400--Sobic001G334100 Sobic004G067400--Sobic006G120800 Sobic002G142700 Sobic002G142700 Sobic004G067400--Sobic002G142700 Sobic004G067400--Sobic003G253400 Sobic004G067400--Sobic002G408600 Sobic004G067400--Sobic009G258400 Sobic009G036200 Sobic009G036200 Sobic004G067400--Sobic009G036200 Sobic010G215900 Sobic010G215900 Sobic004G067400--Sobic010G215900
Octagon: transcription factors


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