Gene annotation
Transcriptome id Sobic.005G199200.1
Synonym Sb05g025620
Functional annotation nuclear pore protein 84/107 containing protein, expressed
UniProt C5Y713
Pfam PF04121
Panther DB PTHR13003
NCBI CDD KOG1964; Nuclear pore complex, rNup107 component (sc Nup84)
KEGG Orthology K14301; NUP107, nuclear pore complex protein Nup107
Gene Ontology GO:0006810; transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT3G14120 : -
RAP-DB (Rice) LOC_Os11g42420.2 : nuclear pore protein 84/107 containing protein, expressed
MaizeGDB (Corn) Zm00025a046065 , Zm00025a029230
Brachypodium KQJ87532 , KQJ87530
Barley HORVU1Hr1G009900.11 , HORVU1Hr1G009900.10 , HORVU1Hr1G009900.13 , HORVU1Hr1G009900.12 , HORVU1Hr1G009900.15 , HORVU1Hr1G009900.5 , HORVU1Hr1G009900.4 , HORVU1Hr1G009900.7 , HORVU1Hr1G009900.6 , HORVU1Hr1G009900.1 , HORVU1Hr1G009900.3 , HORVU1Hr1G009900.2 , HORVU1Hr1G009900.9 , HORVU1Hr1G009900.8
Wheat TraesCS1B02G065700 , TraesCS1B02G065700 , TraesCS1A02G049300 , TraesCS1A02G049300 , TraesCS1A02G049300 , TraesCS1D02G051300 , TraesCS1D02G051300
Populus -


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cDNA sequences
Sobic.005G199200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
2 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
3 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
4 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
5 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
6 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
7 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
8 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
9 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
10 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
11 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
12 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
13 Sobic.008G147200 tubulin, putative, expressed -
14 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
15 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
16 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
17 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
18 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
19 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
20 Sobic.002G408600 expressed protein -


Gene co-expression network
sample Sobic005G199200 Sobic005G199200 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic001G334100 Sobic001G334100 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic001G090300--Sobic005G199200 Sobic009G113100 Sobic009G113100 Sobic001G090300--Sobic009G113100 Sobic005G040900 Sobic005G040900 Sobic001G090300--Sobic005G040900 Sobic003G415100 Sobic003G415100 Sobic001G090300--Sobic003G415100 Sobic009G074700 Sobic009G074700 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G090300--Sobic009G000400 Sobic001G090300--Sobic001G334100 Sobic003G184400--Sobic005G199200 Sobic003G184400--Sobic001G334100 Sobic003G184400--Sobic002G142600 Sobic003G184400--Sobic009G074700 Sobic004G036700 Sobic004G036700 Sobic003G184400--Sobic004G036700 Sobic003G184400--Sobic001G090300 Sobic002G005000 Sobic002G005000 Sobic003G184400--Sobic002G005000 Sobic005G137700 Sobic005G137700 Sobic003G184400--Sobic005G137700 Sobic002G408600 Sobic002G408600 Sobic003G184400--Sobic002G408600 Sobic004G128200--Sobic005G199200 Sobic001G367100 Sobic001G367100 Sobic004G128200--Sobic001G367100 Sobic010G279900 Sobic010G279900 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic001G334100--Sobic003G184400 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic006G033101 Sobic006G033101 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic009G104900--Sobic002G132600 Sobic002G126800 Sobic002G126800 Sobic009G104900--Sobic002G126800 Sobic004G038100 Sobic004G038100 Sobic009G104900--Sobic004G038100 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic009G104900--Sobic001G373800 Sobic002G430300 Sobic002G430300 Sobic009G104900--Sobic002G430300 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic009G040800 Sobic009G040800 Sobic010G278600--Sobic009G040800 Sobic010G278600--Sobic009G074700 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic006G226300 Sobic006G226300 Sobic002G142600--Sobic006G226300 Sobic009G235200 Sobic009G235200 Sobic002G142600--Sobic009G235200 Sobic002G142600--Sobic005G199200 Sobic002G142600--Sobic001G334100 Sobic002G142600--Sobic003G184400 Sobic002G142600--Sobic009G074700 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic001G085800 Sobic001G085800 Sobic003G246000--Sobic001G085800 Sobic001G408600 Sobic001G408600 Sobic003G246000--Sobic001G408600 Sobic004G141800 Sobic004G141800 Sobic003G246000--Sobic004G141800 Sobic003G246000--Sobic002G430300 Sobic001G145400 Sobic001G145400 Sobic003G246000--Sobic001G145400 Sobic002G386600 Sobic002G386600 Sobic003G246000--Sobic002G386600 Sobic006G125900 Sobic006G125900 Sobic003G246000--Sobic006G125900 Sobic002G160700 Sobic002G160700 Sobic003G246000--Sobic002G160700 Sobic003G246000--Sobic005G199200
Octagon: transcription factors


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