Gene annotation
Transcriptome id Sobic.001G416700.1
Synonym Sb01g039230
Functional annotation arginine biosynthesis bifunctional protein argJ 1, putative, expressed
UniProt C5WPC2
Pfam PF01960
Panther DB PTHR23100 PTHR23100:SF0
NCBI CDD KOG2786; Putative glutamate/ornithine acetyltransferase
KEGG Orthology K00620; glutamate N-acetyltransferase / amino-acid N-acetyltransferase
Gene Ontology GO:0006526; arginine biosynthetic process GO:0004358glutamate N-acetyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G37500 : arginine biosynthesis protein ArgJ family
RAP-DB (Rice) LOC_Os03g17120.1 : arginine biosynthesis bifunctional protein argJ 1, putative, expressed
MaizeGDB (Corn) Zm00025a001882
Brachypodium KQK22302
Barley HORVU3Hr1G103540.2 , HORVU3Hr1G103540.3 , HORVU4Hr1G058840.5 , HORVU4Hr1G058840.4 , HORVU4Hr1G058840.3 , HORVU4Hr1G058840.2 , HORVU3Hr1G103540.1
Wheat TraesCS4B02G204000 , TraesCS4B02G204000 , TraesCS4D02G204800 , TraesCS4A02G100500 , TraesCS4A02G100500 , TraesCS4A02G100500
Populus -


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cDNA sequences
Sobic.001G416700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G393700 expressed protein -
2 Sobic.007G187600 pentatricopeptide, putative, expressed -
3 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
4 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
5 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
6 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
9 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
10 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
11 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
12 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
13 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
14 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
15 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
16 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
17 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
18 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
19 Sobic.001G103300 calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed K05853: P-type Ca2+ transporter type 2A
20 Sobic.006G139100 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein


Gene co-expression network
sample Sobic001G416700 Sobic001G416700 Sobic001G393700 Sobic001G393700 Sobic001G416700--Sobic001G393700 Sobic007G187600 Sobic007G187600 Sobic001G416700--Sobic007G187600 Sobic007G143500 Sobic007G143500 Sobic001G416700--Sobic007G143500 Sobic004G340400 Sobic004G340400 Sobic001G416700--Sobic004G340400 Sobic001G291800 Sobic001G291800 Sobic001G416700--Sobic001G291800 Sobic004G307500 Sobic004G307500 Sobic001G416700--Sobic004G307500 Sobic001G145400 Sobic001G145400 Sobic001G416700--Sobic001G145400 Sobic001G334100 Sobic001G334100 Sobic001G416700--Sobic001G334100 Sobic001G168900 Sobic001G168900 Sobic001G416700--Sobic001G168900 Sobic002G430300 Sobic002G430300 Sobic001G393700--Sobic002G430300 Sobic001G393700--Sobic001G145400 Sobic010G099800 Sobic010G099800 Sobic001G393700--Sobic010G099800 Sobic005G114800 Sobic005G114800 Sobic001G393700--Sobic005G114800 Sobic006G224800 Sobic006G224800 Sobic001G393700--Sobic006G224800 Sobic001G103300 Sobic001G103300 Sobic001G393700--Sobic001G103300 Sobic003G405500 Sobic003G405500 Sobic001G393700--Sobic003G405500 Sobic003G240700 Sobic003G240700 Sobic001G393700--Sobic003G240700 Sobic009G045200 Sobic009G045200 Sobic001G393700--Sobic009G045200 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic007G143500--Sobic001G334100 Sobic007G143500--Sobic004G307500 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic004G340400--Sobic001G145400 Sobic004G340400--Sobic001G291800 Sobic004G320500 Sobic004G320500 Sobic004G340400--Sobic004G320500 Sobic010G007100 Sobic010G007100 Sobic004G340400--Sobic010G007100 Sobic008G160000 Sobic008G160000 Sobic004G340400--Sobic008G160000 Sobic001G052400 Sobic001G052400 Sobic004G340400--Sobic001G052400 Sobic001G455800 Sobic001G455800 Sobic004G340400--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic004G340400--Sobic004G145000 Sobic001G401500 Sobic001G401500 Sobic004G340400--Sobic001G401500 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic004G307500--Sobic007G143500 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic001G168900--Sobic007G187600 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic001G168900--Sobic009G258400 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000
Octagon: transcription factors


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