Gene annotation
Transcriptome id Sobic.007G028100.1
Synonym Sb07g002460
Functional annotation WD repeat-containing protein, putative, expressed
UniProt A0A1B6PF66
Pfam PF00400
Panther DB PTHR22838 PTHR22838:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G08560 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g19210.1 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a040378 , Zm00025a030173
Brachypodium -
Barley HORVU7Hr1G074240.1 , HORVU7Hr1G074240.2 , HORVU7Hr1G074240.3 , HORVU5Hr1G019980.1 , HORVU5Hr1G019980.3 , HORVU5Hr1G019980.4 , HORVU5Hr1G019980.2
Wheat TraesCS7D02G307300 , TraesCS5D02G088400 , TraesCS5A02G074900 , TraesCS5A02G074900 , TraesCS5B02G081300 , TraesCS7B02G210600 , TraesCS7B02G210600 , TraesCS7A02G311000 , TraesCS7A02G311000
Populus -


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cDNA sequences
Sobic.007G028100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G314900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G237400 cullin, putative, expressed K03869: cullin 3
3 Sobic.007G000200 expressed protein -
4 Sobic.006G115466 - -
5 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
6 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
7 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
8 Sobic.002G382600 expressed protein -
9 Sobic.009G069000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.002G105200 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
12 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
13 Sobic.009G208100 CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
14 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
15 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
16 Sobic.002G346400 transmembrane protein 49, putative, expressed -
17 Sobic.004G041200 expressed protein -
18 Sobic.004G323700 zinc finger family protein, putative, expressed -
19 Sobic.001G501000 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
20 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase


Gene co-expression network
sample Sobic007G028100 Sobic007G028100 Sobic002G314900 Sobic002G314900 Sobic007G028100--Sobic002G314900 Sobic004G237400 Sobic004G237400 Sobic007G028100--Sobic004G237400 Sobic007G000200 Sobic007G000200 Sobic007G028100--Sobic007G000200 Sobic006G115466 Sobic006G115466 Sobic007G028100--Sobic006G115466 Sobic003G089000 Sobic003G089000 Sobic007G028100--Sobic003G089000 Sobic006G004500 Sobic006G004500 Sobic007G028100--Sobic006G004500 Sobic001G436900 Sobic001G436900 Sobic007G028100--Sobic001G436900 Sobic002G382600 Sobic002G382600 Sobic007G028100--Sobic002G382600 Sobic009G069000 Sobic009G069000 Sobic007G028100--Sobic009G069000 Sobic002G314900--Sobic007G028100 Sobic001G279100 Sobic001G279100 Sobic002G314900--Sobic001G279100 Sobic001G005600 Sobic001G005600 Sobic002G314900--Sobic001G005600 Sobic003G146900 Sobic003G146900 Sobic002G314900--Sobic003G146900 Sobic002G314900--Sobic006G115466 Sobic004G091200 Sobic004G091200 Sobic002G314900--Sobic004G091200 Sobic010G129600 Sobic010G129600 Sobic002G314900--Sobic010G129600 Sobic001G135500 Sobic001G135500 Sobic002G314900--Sobic001G135500 Sobic001G517500 Sobic001G517500 Sobic002G314900--Sobic001G517500 Sobic002G105200 Sobic002G105200 Sobic004G237400--Sobic002G105200 Sobic009G113000 Sobic009G113000 Sobic004G237400--Sobic009G113000 Sobic003G352200 Sobic003G352200 Sobic004G237400--Sobic003G352200 Sobic004G237400--Sobic002G382600 Sobic006G115600 Sobic006G115600 Sobic004G237400--Sobic006G115600 Sobic004G237400--Sobic006G004500 Sobic004G264400 Sobic004G264400 Sobic004G237400--Sobic004G264400 Sobic010G164000 Sobic010G164000 Sobic004G237400--Sobic010G164000 Sobic001G473600 Sobic001G473600 Sobic004G237400--Sobic001G473600 Sobic006G032300 Sobic006G032300 Sobic007G000200--Sobic006G032300 Sobic003G046300 Sobic003G046300 Sobic007G000200--Sobic003G046300 Sobic008G002300 Sobic008G002300 Sobic007G000200--Sobic008G002300 Sobic002G245000 Sobic002G245000 Sobic007G000200--Sobic002G245000 Sobic001G430400 Sobic001G430400 Sobic007G000200--Sobic001G430400 Sobic002G164200 Sobic002G164200 Sobic007G000200--Sobic002G164200 Sobic007G000200--Sobic003G089000 Sobic001G542450 Sobic001G542450 Sobic007G000200--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic007G000200--Sobic006G088200 Sobic001G298300 Sobic001G298300 Sobic006G115466--Sobic001G298300 Sobic006G115466--Sobic002G314900 Sobic006G115466--Sobic007G028100 Sobic006G115466--Sobic001G279100 Sobic006G115466--Sobic010G129600 Sobic006G115466--Sobic001G436900 Sobic008G061100 Sobic008G061100 Sobic006G115466--Sobic008G061100 Sobic004G349800 Sobic004G349800 Sobic006G115466--Sobic004G349800 Sobic006G115466--Sobic006G004500 Sobic004G177300 Sobic004G177300 Sobic003G089000--Sobic004G177300 Sobic003G089000--Sobic006G032300 Sobic002G335600 Sobic002G335600 Sobic003G089000--Sobic002G335600 Sobic010G072800 Sobic010G072800 Sobic003G089000--Sobic010G072800 Sobic001G273700 Sobic001G273700 Sobic003G089000--Sobic001G273700 Sobic002G142900 Sobic002G142900 Sobic003G089000--Sobic002G142900 Sobic001G263600 Sobic001G263600 Sobic003G089000--Sobic001G263600 Sobic001G375600 Sobic001G375600 Sobic003G089000--Sobic001G375600 Sobic003G089000--Sobic007G000200 Sobic006G004500--Sobic004G237400 Sobic006G004500--Sobic001G436900 Sobic006G004500--Sobic003G089000 Sobic002G058500 Sobic002G058500 Sobic006G004500--Sobic002G058500 Sobic006G004500--Sobic002G105200 Sobic006G004500--Sobic007G028100 Sobic006G004500--Sobic007G000200 Sobic006G004500--Sobic009G113000 Sobic007G060000 Sobic007G060000 Sobic006G004500--Sobic007G060000 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic006G271200 Sobic006G271200 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic001G436900--Sobic009G113000 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200 Sobic002G382600--Sobic002G105200 Sobic010G167900 Sobic010G167900 Sobic002G382600--Sobic010G167900 Sobic002G382600--Sobic009G113000 Sobic002G382600--Sobic004G237400 Sobic002G382600--Sobic010G264200 Sobic002G382600--Sobic004G331100 Sobic002G382600--Sobic001G279100 Sobic001G109800 Sobic001G109800 Sobic002G382600--Sobic001G109800 Sobic002G382600--Sobic001G436900 Sobic009G069000--Sobic007G028100 Sobic009G069000--Sobic007G000200 Sobic006G179400 Sobic006G179400 Sobic009G069000--Sobic006G179400 Sobic006G139100 Sobic006G139100 Sobic009G069000--Sobic006G139100 Sobic001G265600 Sobic001G265600 Sobic009G069000--Sobic001G265600 Sobic001G293700 Sobic001G293700 Sobic009G069000--Sobic001G293700 Sobic009G069000--Sobic002G245000 Sobic005G197100 Sobic005G197100 Sobic009G069000--Sobic005G197100 Sobic009G069000--Sobic003G089000
Octagon: transcription factors


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