Gene annotation
Transcriptome id Sobic.002G314900.1
Synonym Sb02g034425
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W6M2
Pfam PF13890
Panther DB PTHR21422
NCBI CDD KOG2390; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT5G55060 : -
RAP-DB (Rice) LOC_Os07g32670.1 : expressed protein
MaizeGDB (Corn) Zm00025a048185
Brachypodium PNT75022 , PNT75023 , PNT75024 , KQK16051 , KQK16050 , KQK16053 , KQK16052 , KQK16048 , KQK16049 , KQK16047
Barley HORVU2Hr1G047230.6 , HORVU2Hr1G047230.7 , HORVU2Hr1G047230.4 , HORVU2Hr1G047230.5 , HORVU2Hr1G047230.2 , HORVU2Hr1G047230.3 , HORVU2Hr1G047230.1 , HORVU2Hr1G047230.8 , HORVU2Hr1G047230.9 , HORVU2Hr1G047230.18 , HORVU2Hr1G047230.19 , HORVU2Hr1G047230.14 , HORVU2Hr1G047230.15 , HORVU2Hr1G047230.16 , HORVU2Hr1G047230.17 , HORVU2Hr1G047230.10 , HORVU2Hr1G047230.11 , HORVU2Hr1G047230.12 , HORVU2Hr1G047230.13 , HORVU2Hr1G047230.21 , HORVU2Hr1G047230.20 , HORVU2Hr1G047230.23 , HORVU2Hr1G047230.22 , HORVU2Hr1G047230.25 , HORVU2Hr1G047230.24 , HORVU2Hr1G047230.27 , HORVU2Hr1G047230.26 , HORVU2Hr1G047230.29 , HORVU2Hr1G047230.28 , HORVU2Hr1G047230.43 , HORVU2Hr1G047230.42 , HORVU2Hr1G047230.41 , HORVU2Hr1G047230.40 , HORVU2Hr1G047230.36 , HORVU2Hr1G047230.37 , HORVU2Hr1G047230.34 , HORVU2Hr1G047230.35 , HORVU2Hr1G047230.32 , HORVU2Hr1G047230.33 , HORVU2Hr1G047230.30 , HORVU2Hr1G047230.31 , HORVU2Hr1G047230.38 , HORVU2Hr1G047230.39
Wheat TraesCS2B02G274700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G028100 WD repeat-containing protein, putative, expressed -
2 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
3 Sobic.001G005600 CBS domain containing membrane protein, putative, expressed -
4 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
5 Sobic.006G115466 - -
6 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
7 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
8 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
9 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
10 Sobic.009G160600 Yip1 domain containing protein, expressed -
11 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
12 Sobic.002G382600 expressed protein -
13 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
14 Sobic.005G197100 acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
15 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
16 Sobic.008G061100 expressed protein -
17 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
18 Sobic.007G018200 RNA recognition motif containing protein, putative, expressed -
19 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.004G041200 expressed protein -


Gene co-expression network
sample Sobic002G314900 Sobic002G314900 Sobic007G028100 Sobic007G028100 Sobic002G314900--Sobic007G028100 Sobic001G279100 Sobic001G279100 Sobic002G314900--Sobic001G279100 Sobic001G005600 Sobic001G005600 Sobic002G314900--Sobic001G005600 Sobic003G146900 Sobic003G146900 Sobic002G314900--Sobic003G146900 Sobic006G115466 Sobic006G115466 Sobic002G314900--Sobic006G115466 Sobic004G091200 Sobic004G091200 Sobic002G314900--Sobic004G091200 Sobic010G129600 Sobic010G129600 Sobic002G314900--Sobic010G129600 Sobic001G135500 Sobic001G135500 Sobic002G314900--Sobic001G135500 Sobic001G517500 Sobic001G517500 Sobic002G314900--Sobic001G517500 Sobic007G028100--Sobic002G314900 Sobic004G237400 Sobic004G237400 Sobic007G028100--Sobic004G237400 Sobic007G000200 Sobic007G000200 Sobic007G028100--Sobic007G000200 Sobic007G028100--Sobic006G115466 Sobic003G089000 Sobic003G089000 Sobic007G028100--Sobic003G089000 Sobic006G004500 Sobic006G004500 Sobic007G028100--Sobic006G004500 Sobic001G436900 Sobic001G436900 Sobic007G028100--Sobic001G436900 Sobic002G382600 Sobic002G382600 Sobic007G028100--Sobic002G382600 Sobic009G069000 Sobic009G069000 Sobic007G028100--Sobic009G069000 Sobic001G279100--Sobic002G382600 Sobic008G061100 Sobic008G061100 Sobic001G279100--Sobic008G061100 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G279100--Sobic001G517500 Sobic001G279100--Sobic010G129600 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G279100--Sobic001G436900 Sobic009G160600 Sobic009G160600 Sobic001G005600--Sobic009G160600 Sobic001G005600--Sobic010G129600 Sobic007G042900 Sobic007G042900 Sobic001G005600--Sobic007G042900 Sobic008G140400 Sobic008G140400 Sobic001G005600--Sobic008G140400 Sobic003G150900 Sobic003G150900 Sobic001G005600--Sobic003G150900 Sobic004G323700 Sobic004G323700 Sobic001G005600--Sobic004G323700 Sobic004G068500 Sobic004G068500 Sobic001G005600--Sobic004G068500 Sobic008G021000 Sobic008G021000 Sobic001G005600--Sobic008G021000 Sobic001G161900 Sobic001G161900 Sobic001G005600--Sobic001G161900 Sobic010G067700 Sobic010G067700 Sobic003G146900--Sobic010G067700 Sobic003G355000 Sobic003G355000 Sobic003G146900--Sobic003G355000 Sobic009G216000 Sobic009G216000 Sobic003G146900--Sobic009G216000 Sobic003G146900--Sobic002G314900 Sobic004G349800 Sobic004G349800 Sobic003G146900--Sobic004G349800 Sobic010G095700 Sobic010G095700 Sobic003G146900--Sobic010G095700 Sobic008G128600 Sobic008G128600 Sobic003G146900--Sobic008G128600 Sobic006G261100 Sobic006G261100 Sobic003G146900--Sobic006G261100 Sobic001G473600 Sobic001G473600 Sobic003G146900--Sobic001G473600 Sobic001G298300 Sobic001G298300 Sobic006G115466--Sobic001G298300 Sobic006G115466--Sobic002G314900 Sobic006G115466--Sobic007G028100 Sobic006G115466--Sobic001G279100 Sobic006G115466--Sobic010G129600 Sobic006G115466--Sobic001G436900 Sobic006G115466--Sobic008G061100 Sobic006G115466--Sobic004G349800 Sobic006G115466--Sobic006G004500 Sobic009G258400 Sobic009G258400 Sobic004G091200--Sobic009G258400 Sobic004G091200--Sobic001G005600 Sobic003G005200 Sobic003G005200 Sobic004G091200--Sobic003G005200 Sobic004G091200--Sobic010G129600 Sobic004G091200--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic004G091200--Sobic001G114500 Sobic002G105200 Sobic002G105200 Sobic004G091200--Sobic002G105200 Sobic003G201900 Sobic003G201900 Sobic004G091200--Sobic003G201900 Sobic003G038600 Sobic003G038600 Sobic004G091200--Sobic003G038600 Sobic010G129600--Sobic001G005600 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic006G271200 Sobic006G271200 Sobic010G129600--Sobic006G271200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic010G129600--Sobic009G160600 Sobic006G237900 Sobic006G237900 Sobic010G129600--Sobic006G237900 Sobic010G129600--Sobic008G061100 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic002G390400 Sobic002G390400 Sobic001G135500--Sobic002G390400 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic001G517500--Sobic003G355000 Sobic001G517500--Sobic007G119200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic002G034600 Sobic002G034600 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic004G146500 Sobic004G146500 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700
Octagon: transcription factors


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