Gene annotation
Transcriptome id Sobic.008G061100.1
Synonym Sb08g005120
Functional annotation expressed protein
UniProt C5YT69
Pfam PF08991
Panther DB PTHR15590 PTHR15590:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09794 : Cox19 family protein (CHCH motif)
RAP-DB (Rice) LOC_Os12g08210.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ91984
Barley HORVU5Hr1G037910.4 , HORVU5Hr1G037910.3 , HORVU5Hr1G037910.1 , HORVU5Hr1G037910.2 , HORVU5Hr1G037910.5
Wheat TraesCS5B02G121200 , TraesCS5A02G119400 , TraesCS5D02G126500
Populus -


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cDNA sequences
Sobic.008G061100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
2 Sobic.010G129600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
3 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
4 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
5 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
6 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
7 Sobic.008G186200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
8 Sobic.006G115466 - -
9 Sobic.001G436900 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
10 Sobic.008G138500 expressed protein -
11 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
12 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
13 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
14 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
15 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.002G314900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
18 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
19 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
20 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic008G061100 Sobic008G061100 Sobic001G279100 Sobic001G279100 Sobic008G061100--Sobic001G279100 Sobic010G129600 Sobic010G129600 Sobic008G061100--Sobic010G129600 Sobic003G304200 Sobic003G304200 Sobic008G061100--Sobic003G304200 Sobic006G237900 Sobic006G237900 Sobic008G061100--Sobic006G237900 Sobic006G271200 Sobic006G271200 Sobic008G061100--Sobic006G271200 Sobic001G298300 Sobic001G298300 Sobic008G061100--Sobic001G298300 Sobic008G186200 Sobic008G186200 Sobic008G061100--Sobic008G186200 Sobic006G115466 Sobic006G115466 Sobic008G061100--Sobic006G115466 Sobic001G436900 Sobic001G436900 Sobic008G061100--Sobic001G436900 Sobic002G382600 Sobic002G382600 Sobic001G279100--Sobic002G382600 Sobic001G279100--Sobic008G061100 Sobic002G314900 Sobic002G314900 Sobic001G279100--Sobic002G314900 Sobic007G119200 Sobic007G119200 Sobic001G279100--Sobic007G119200 Sobic001G517500 Sobic001G517500 Sobic001G279100--Sobic001G517500 Sobic001G279100--Sobic010G129600 Sobic001G279100--Sobic006G115466 Sobic007G046200 Sobic007G046200 Sobic001G279100--Sobic007G046200 Sobic001G279100--Sobic001G436900 Sobic001G005600 Sobic001G005600 Sobic010G129600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic010G129600--Sobic001G161900 Sobic001G313500 Sobic001G313500 Sobic010G129600--Sobic001G313500 Sobic010G129600--Sobic006G271200 Sobic004G091200 Sobic004G091200 Sobic010G129600--Sobic004G091200 Sobic010G261600 Sobic010G261600 Sobic010G129600--Sobic010G261600 Sobic009G160600 Sobic009G160600 Sobic010G129600--Sobic009G160600 Sobic010G129600--Sobic006G237900 Sobic010G129600--Sobic008G061100 Sobic007G088100 Sobic007G088100 Sobic003G304200--Sobic007G088100 Sobic003G304200--Sobic008G061100 Sobic003G304200--Sobic001G436900 Sobic002G058500 Sobic002G058500 Sobic003G304200--Sobic002G058500 Sobic001G375600 Sobic001G375600 Sobic003G304200--Sobic001G375600 Sobic001G227800 Sobic001G227800 Sobic003G304200--Sobic001G227800 Sobic003G304200--Sobic001G279100 Sobic006G004500 Sobic006G004500 Sobic003G304200--Sobic006G004500 Sobic003G005600 Sobic003G005600 Sobic003G304200--Sobic003G005600 Sobic006G237900--Sobic006G271200 Sobic004G351300 Sobic004G351300 Sobic006G237900--Sobic004G351300 Sobic001G003000 Sobic001G003000 Sobic006G237900--Sobic001G003000 Sobic005G059600 Sobic005G059600 Sobic006G237900--Sobic005G059600 Sobic006G237900--Sobic010G129600 Sobic010G130200 Sobic010G130200 Sobic006G237900--Sobic010G130200 Sobic010G043400 Sobic010G043400 Sobic006G237900--Sobic010G043400 Sobic001G089800 Sobic001G089800 Sobic006G237900--Sobic001G089800 Sobic006G237900--Sobic001G436900 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic006G271200--Sobic004G351300 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic001G298300--Sobic006G115466 Sobic001G298300--Sobic006G271200 Sobic004G102400 Sobic004G102400 Sobic001G298300--Sobic004G102400 Sobic001G298300--Sobic001G003000 Sobic001G085900 Sobic001G085900 Sobic001G298300--Sobic001G085900 Sobic001G298300--Sobic010G129600 Sobic001G298300--Sobic001G436900 Sobic007G178100 Sobic007G178100 Sobic001G298300--Sobic007G178100 Sobic001G298300--Sobic006G237900 Sobic002G364800 Sobic002G364800 Sobic008G186200--Sobic002G364800 Sobic002G189400 Sobic002G189400 Sobic008G186200--Sobic002G189400 Sobic001G265600 Sobic001G265600 Sobic008G186200--Sobic001G265600 Sobic004G237400 Sobic004G237400 Sobic008G186200--Sobic004G237400 Sobic004G177300 Sobic004G177300 Sobic008G186200--Sobic004G177300 Sobic007G184500 Sobic007G184500 Sobic008G186200--Sobic007G184500 Sobic002G262900 Sobic002G262900 Sobic008G186200--Sobic002G262900 Sobic008G156700 Sobic008G156700 Sobic008G186200--Sobic008G156700 Sobic008G186200--Sobic006G271200 Sobic006G115466--Sobic001G298300 Sobic006G115466--Sobic002G314900 Sobic007G028100 Sobic007G028100 Sobic006G115466--Sobic007G028100 Sobic006G115466--Sobic001G279100 Sobic006G115466--Sobic010G129600 Sobic006G115466--Sobic001G436900 Sobic006G115466--Sobic008G061100 Sobic004G349800 Sobic004G349800 Sobic006G115466--Sobic004G349800 Sobic006G115466--Sobic006G004500 Sobic004G331100 Sobic004G331100 Sobic001G436900--Sobic004G331100 Sobic003G320700 Sobic003G320700 Sobic001G436900--Sobic003G320700 Sobic004G065000 Sobic004G065000 Sobic001G436900--Sobic004G065000 Sobic001G436900--Sobic006G271200 Sobic006G204900 Sobic006G204900 Sobic001G436900--Sobic006G204900 Sobic007G075400 Sobic007G075400 Sobic001G436900--Sobic007G075400 Sobic009G113000 Sobic009G113000 Sobic001G436900--Sobic009G113000 Sobic001G436900--Sobic002G382600 Sobic010G264200 Sobic010G264200 Sobic001G436900--Sobic010G264200
Octagon: transcription factors


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